| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3796 |
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| Symbol | |
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| ID | 1185464 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 4297651 |
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| End bp | 4298718 |
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| Gene Length | 1068 bp |
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| Protein Length | 355 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637395146 |
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| Product | GGDEF domain protein |
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| Protein accession | NP_793570 |
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| Protein GI | 28870951 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0128052 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGGTG AAATGCAGAC ACGGATAAAG CATCTGCTCT CGCCCGCCAT TGCGCTTGTG
CAATGTATTG CGATTGTCTG TTGGCTGGCT GTCCTGATCG TCACGCCGAA TGTTAATTGC
GGCGCTCGCG AGATCGCCTT GACCACGGGG CTGGTGCTGA CCTGCTGGTG GCAATATCGC
GCCACGCATT TCAGCGTCTG GCGTGGTGTG GGCATGGCTT CGGTAATCAT CGTGGCCCTG
AGCTTTTCGC GGGCCAGTCA GTTGAACAGC GAACTGGGTA TCAACTGGGC ATTGCCGATC
GCGCTCATGA TCATCCTGTG CTCGACATTG TTGGTGGTAT ATACCCGCGA CTATCTGTTT
GTGTCGGTGC TCTCCTGGAT CATTCTTTCT CCCGCGCAGG GTATCGACAC GGACAGTGCC
GCCTATGTAT TCATGATGCT GTTCTTTGTT TCGTCGATTG CTCTGGGTGT CGTACTGAAT
CACACCTACA CCCGAACCCT GCGCAAGGTG TTGACATTGG AAAGCCGGTT TCGCGAACTG
TCGCTGACCG ATGACCTGAC CGATATATTG AATCGCCGGG CATTGATGCT GGCACTCGAT
GAACAGCTGG CGAATAACAG TGGCGGTTAT TTTCTGATGC TCGACATCGA TAATTTCAAA
ACCATCAACG ATCAGTTCGG GCATGACGCA GGCGATGAAG TTTTGCGTCT CATGGCGTCA
TGCCTGCAAC AAACGCCGGG AAGTCTTGCG TTCGGTCGCA TGGGGGGAGA GGAGTTTGGC
GTCATTCTTC CTGTTTCCGG TGAGCCTGTG GCCTGTGACT ATGTACTGCG CCTGCTGGAC
ACCATCAGAA GATCGCCGGC GGTCAGTTCT CTGACCTGCA GTGCAGGGCT TGCCGACATC
GATGCGAACT CGACCAGTTC GCAAGTGCTC AAGACGGCTG ACATCAATAT GTATCAGGCC
AAGCGGGAGG GTAAGGACCG GGCATTCTGG AGGGGTGTGC CGATGACTGA CTTGCCAGCG
CAAGGCCCGA TGGGTGAGGG CGAAGAGGTT CGGGCGTTGG CGCCGTAG
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| Protein sequence | MNGEMQTRIK HLLSPAIALV QCIAIVCWLA VLIVTPNVNC GAREIALTTG LVLTCWWQYR
ATHFSVWRGV GMASVIIVAL SFSRASQLNS ELGINWALPI ALMIILCSTL LVVYTRDYLF
VSVLSWIILS PAQGIDTDSA AYVFMMLFFV SSIALGVVLN HTYTRTLRKV LTLESRFREL
SLTDDLTDIL NRRALMLALD EQLANNSGGY FLMLDIDNFK TINDQFGHDA GDEVLRLMAS
CLQQTPGSLA FGRMGGEEFG VILPVSGEPV ACDYVLRLLD TIRRSPAVSS LTCSAGLADI
DANSTSSQVL KTADINMYQA KREGKDRAFW RGVPMTDLPA QGPMGEGEEV RALAP
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