| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3771 |
|---|
| Symbol | |
|---|
| ID | 1185439 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 4271484 |
|---|
| End bp | 4272791 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637395121 |
|---|
| Product | major facilitator family transporter |
|---|
| Protein accession | NP_793545 |
|---|
| Protein GI | 28870926 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2271] Sugar phosphate permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0726809 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAGG AACTGCGGCT TATACGCCGC ATCACGTTCA AACTGATTCC TTTCCTTATT
CTGCTTTACC TCATCGCTTA TGTAGATCGT TCCGCCGTGG GTTTTGCCAA ACTGCACATG
GGCGCGGACA TCGGGATCGG CGACGCCGCC TATGGTCTGG GTGCCGGGCT GTTCTTCATC
GGCTACTTCC TGTTTGAAAT CCCCAGCAAT CTGATGCTCG AGCGCTTTGG CGCACGCCGC
TGGTTCGCGC GGATCATGAT CACCTGGGGC GCGATCACCA TCGGCATGGC GTTTGTGCAG
GGGCCGCACA GTTTCTATGT GATGCGCTTT CTGCTGGGCG CGGCCGAGGC GGGCTTCTTT
CCCGGCGTGC TTTATTACAT CACTCAGTGG TTTCCGGTGC GCCATCGCGG CAAGATCCTC
GGTCTGTTCA TTCTGTCGCA ACCCATCGCC ATGATGATCA CCGGGCCCGT CTCGGGCGGT
CTGCTGGGCA TGGACGGCGT GCTCGGCCTG CATGGCTGGC AGTGGCTGTT CATCGTCATC
GGCACCCCGG CGATTCTGCT CACCTGGCCG GTGTTGCGCT GGTTGCCGGA CGGTCCGCAA
CAGGTCAAGT GGATGGATCA GGCCGAGAAA GACTGGCTGG CCGGTGAACT AAAAAAAGAC
CTCGAACACT ACGGTCAGAC TCGGCACGGC AACCCGTTGC ATGCGCTGAA AGACAAGCGT
GTGTTGCTTC TGGCGCTGTT CTATCTGCCG GTGACATTGA GCATTTACGG CCTGGGCCTG
TGGTTGCCGA CGCTGATCAA GCAGTTTGGC GGCAGCGATT TGACCACCGG TTTTGTGTCT
TCGGTGCCGT ACATCTTCGG CATCATCGGC CTGCTGATCG TGCCCCGCAG TTCTGACCGC
CTCAATGACC GTTACGGGCA TCTGGCGGTG CTTTATGTGC TGGGCGCCAT CGGTCTGTTC
TGCAGCGCCT GGCTGACCCT GCCGGTCGCG CAACTGGCTG CGCTGTGTGT CGTGGCCTTC
GCGTTGTTTT CCTGCACGGC GGTGTTCTGG ACCTTGCCGG GTCGCTTCTT TGCCGGTGCC
AGCGCGGCAG CCGGTATTGC GCTGATCAAT TCGGTCGGCA ATCTGGGCGG CTACATTGGT
CCGTTCGTGA TCGGTGCGCT GAAGGAAATG ACCGGCAGCC TGGCCTCGGG CCTGTATTTC
CTGTCCGGGG TGATGGTATT CGGCCTGGTG TTGACCGGGA TCGTTTATCA CGTGCTGGAA
CGTAAGCATG TGTTGCCGGC TTCTGATTTT GCGGCGAGTG CCAGGTGA
|
|---|
| Protein sequence | MSQELRLIRR ITFKLIPFLI LLYLIAYVDR SAVGFAKLHM GADIGIGDAA YGLGAGLFFI
GYFLFEIPSN LMLERFGARR WFARIMITWG AITIGMAFVQ GPHSFYVMRF LLGAAEAGFF
PGVLYYITQW FPVRHRGKIL GLFILSQPIA MMITGPVSGG LLGMDGVLGL HGWQWLFIVI
GTPAILLTWP VLRWLPDGPQ QVKWMDQAEK DWLAGELKKD LEHYGQTRHG NPLHALKDKR
VLLLALFYLP VTLSIYGLGL WLPTLIKQFG GSDLTTGFVS SVPYIFGIIG LLIVPRSSDR
LNDRYGHLAV LYVLGAIGLF CSAWLTLPVA QLAALCVVAF ALFSCTAVFW TLPGRFFAGA
SAAAGIALIN SVGNLGGYIG PFVIGALKEM TGSLASGLYF LSGVMVFGLV LTGIVYHVLE
RKHVLPASDF AASAR
|
|---|
| |