Gene PSPTO_3716 details

Gene Information

• Locus tag: PSPTO_3716
• ID: 1185381
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 4193408
• End bp: 4195237
• Gene Length: 1830 bp
• Protein Length: 609 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 637395063
• Product: ABC transporter, periplasmic substrate-binding protein
• Protein accession: NP_793490
• Protein GI: 28870871
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG4166] ABC-type oligopeptide transport system, periplasmic component

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGATACGTC CCTTCCTGCT AATCGTCAGC CTGGCCTTGA GCTTCTGCGC CAACGCAGCC 
ATTACCGAAA GTCATGGCTA CGCGCAGTTT GGTGTGCTCA AGTACCCGGC CAGCTTCACT 
CATTTCGACT GGGTCAATCC CGAGGCGCCG AAAGGTGGCA CCTTGAGAAT GATGGCGTTT 
GGCACTTTCG ATACGCTCAA CCCCTACACA TTCAAGGGCA GCAGCCCGGT CTCGACCGGA 
AACTTCCTGC AATATGGCGT CAGTGAGCTG AACGAACCGC TCATGGTCGG CACCGGCCAG 
TACGACCCCT CCGGCGACGA GCCGACGTCC AGTTACGGGC TGATTGCCCA GTCAGTGGAA 
TACAGCGAGG ACCGCAGTTG GGTGGTGTTC AACCTGCGCC CGCAAGCGCG CTTTCACGAC 
GGCAAGCCGA TCACCGCCTA CGACGTGGCC TTTTCCTACC GGACCCTGCT CAAGGACGGT 
CACCCTCAGT ACCGCACCGC CCTGCAGGAA GTGCAACGCG TCGATATCCT CAATCGGCAC 
CGCATCCGCT TTGTCTTCAA GCGTTCCGGC AACCCGCTGC TGATCCTGCG TCTGGGCGAA 
CTGCCGGTGC TGCCCCAGCA TTACTGGAAA GACAGAGACT TCAAGGCCAC GACCTTCGAG 
CCGCCACTGG GCAGCGGCCC CTACCGCATC ACGCGCGTAC AGCCCGGACG CCAACTGGTG 
TTCGAGCGGG TCAAGGATTA CTGGGGCAAG GACTTGCCGG TCAATCGCGG CAAATACAAT 
TTCGACCGGG TCGAGGTCGA GTTCTACCGC GACAGTGACG TGGCGTTCGA GGCGTTCAAG 
GCGGGCGAAT TCGATATCTA CATCGAACAT CAGGCCAAAA ACTGGGCCAA TGGCTACAAC 
TTTCCAGCGG TCGCCAACGG CCAGGTGATC AAGGCGCAGA TCCCGCACCG CATACCGACC 
CAGACCCAAG GCCTGTTCAT GAACACCCGG CGCGCGGCCT TCGCCGACAT TCGCGTGCGT 
GAAGCGCTGG GGCTGCTGTT CAATTTCGAG TGGACCAACC GCACGCTGTT CAGCGACGCC 
TACGCCCGTT CGACCAGCTA CTACCCCAAC AGCGAATTTT CCGCGACGGG CCTGCCGACC 
GGCGGTGAAT GGCTGATGCT CGCCCCTTAC CGCGATCAAT TGCCCCCCAG CCTGTTCACC 
CAACCGTTTG CGCCATCGAA GACCGATGGC GGCGGCATCC CGCGCGATAC CCTGCGCAAA 
GCCCTGAAAC TGCTGACCGA CGCAGGCTGG ACGCTTTCCG ATCAGGGGTT GCTCAACGCG 
AACAAACAAC CGTTGCGCTT CGAGATCCTG CTGGTCAACC CCAACCTTGA GCGCATTCTG 
CAGCCCTACA TTGAGGACCT GCGCCGTCTG GGCATCAATG TCGGCCTTCG CACCGTCGAC 
CGCGCGCAGT ACAAACAGCG CCTGGACCGC TTCGACTTCG ACATGATTCT CATGACCCTG 
CAACAGACGC TGAGCCCCGG TCTTGAGCAG TGGCAATATT TTCACTCCAG TCAGGCCACG 
ATCAACGGCA GCAAGAACTA CGCCGGTATC GCCAACCCGG TGGTCGATGC GCTGCTGAAC 
AAACTGCTGG CCGCGCAGAC CCGTGACGAA CAGGTCGCCG CCGCACGGGC GCTGGACCGC 
GTGCTGCTGT CCCAGCACTA CAGCATTCCC AATTGGTACC TGAACAATCA CCGGCTTGCC 
TATCGCAACC GATTCGCCAT GGTCACTACC CCGCCCTACA CCCTGGGGCT ACGTGCGTGG 
TGGCTCAAGA CTCTGGAGAA GCCCCGATGA 

 

Protein sequence

MIRPFLLIVS LALSFCANAA ITESHGYAQF GVLKYPASFT HFDWVNPEAP KGGTLRMMAF 
GTFDTLNPYT FKGSSPVSTG NFLQYGVSEL NEPLMVGTGQ YDPSGDEPTS SYGLIAQSVE 
YSEDRSWVVF NLRPQARFHD GKPITAYDVA FSYRTLLKDG HPQYRTALQE VQRVDILNRH 
RIRFVFKRSG NPLLILRLGE LPVLPQHYWK DRDFKATTFE PPLGSGPYRI TRVQPGRQLV 
FERVKDYWGK DLPVNRGKYN FDRVEVEFYR DSDVAFEAFK AGEFDIYIEH QAKNWANGYN 
FPAVANGQVI KAQIPHRIPT QTQGLFMNTR RAAFADIRVR EALGLLFNFE WTNRTLFSDA 
YARSTSYYPN SEFSATGLPT GGEWLMLAPY RDQLPPSLFT QPFAPSKTDG GGIPRDTLRK 
ALKLLTDAGW TLSDQGLLNA NKQPLRFEIL LVNPNLERIL QPYIEDLRRL GINVGLRTVD 
RAQYKQRLDR FDFDMILMTL QQTLSPGLEQ WQYFHSSQAT INGSKNYAGI ANPVVDALLN 
KLLAAQTRDE QVAAARALDR VLLSQHYSIP NWYLNNHRLA YRNRFAMVTT PPYTLGLRAW 
WLKTLEKPR