| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3703 |
|---|
| Symbol | |
|---|
| ID | 1185368 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 4176175 |
|---|
| End bp | 4177338 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637395050 |
|---|
| Product | HlyD family secretion protein |
|---|
| Protein accession | NP_793477 |
|---|
| Protein GI | 28870858 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAAT CCAAGACCCC TGATACCGAA GCACCTCGCA GCTCGCCTGC ACCGGCCCCG
GCACCCTTGA CGTCCCCGGT CACCAGCAAG CCGCGCTCGA CCCGCAAGCG AGTGGTGTCT
TCAGTGATTT TCGGTGCCGT CGCACTGGCC GGGGTGCTGC TGGTGTTGTA CGCCTGGCAG
TTTCCACCGT TTGCCAGCCC CATCGAGAGC ACCGAGAACG CGCAGGTCAA AGGCCAGACC
ACGCTGATCG CGCCGCAACT GAGCGGTTAT GTTTATGAGG TGCCGGTGCA AGACTTTCAG
TTCGTCAAGG CGGGCGACTT GCTGGTGCGT CTGGATGACC GCATCTACCG TCAGCGCCTC
GATCAGGCCT TGGCGCAACT GGCTGTGCAG AAGGCATCGC TGGCCAATAA CCTGCAACAG
CGGCGCAGCG CCGAAGCGAC GATCGGCCAG CGTCAGGCCG AGTTGCAGAA CAGCATCGCC
CAGAGCCGCA AGAGCGCCGC CGATCTGCGC CGCAATCAGG CGCTGGTGAC CGATGGTTCG
GTGTCGAAAA GCGAGCTGGA CGTGACCCGG GCGGCCGATG CCCAGGCCAA TGCCGCCGTT
GCAGAGGCGA AGGCAGTATT GCTCATCGCC CGTGAGGACC TGCAAACCGT CATCGTCAAC
CGTGGCTCGC TGGAAGCCTC GGTGGCCAAC GCCCAGGCAG CCATCGAACT GGCGCGCATC
GACCTGGACA ACACCCGCAT TGTTGCTCCG CGTGACGGTC AGTTGGGGCA GATTGGTGTA
CGTTTGGGTG CCTACGTCAA TTCGGGTGCG CAACTGATGG CGCTGGTGCC GGAGCAGCGC
TGGATCGTCG CCAACATGAA AGAAACCCAG ATGGCCAACG TGCGCCTCGG CCAGCCGGTG
AGTTTCACCG TCGATGCGCT GGACGGTCGT GAAATGCACG GCCATGTACA AAGAATATCG
CCCTCAGCAG GTTCGGAGTT CAGCCTGCTG CCCGCCGATA ACGCGACCGG CAACTTCGTG
AAAATCTCCC AGCGCATCCC GGTGCGCATT GTCGTCGATG CCGACCAGCC GATGCTTGAG
CATCTACGGC CGGGGATGTC GGTGGTGGTA AGTATCGATA CCAGCGTAGA GGGGGATGAG
CCACCGGACG CTGAGGCACG ATAA
|
|---|
| Protein sequence | MTESKTPDTE APRSSPAPAP APLTSPVTSK PRSTRKRVVS SVIFGAVALA GVLLVLYAWQ
FPPFASPIES TENAQVKGQT TLIAPQLSGY VYEVPVQDFQ FVKAGDLLVR LDDRIYRQRL
DQALAQLAVQ KASLANNLQQ RRSAEATIGQ RQAELQNSIA QSRKSAADLR RNQALVTDGS
VSKSELDVTR AADAQANAAV AEAKAVLLIA REDLQTVIVN RGSLEASVAN AQAAIELARI
DLDNTRIVAP RDGQLGQIGV RLGAYVNSGA QLMALVPEQR WIVANMKETQ MANVRLGQPV
SFTVDALDGR EMHGHVQRIS PSAGSEFSLL PADNATGNFV KISQRIPVRI VVDADQPMLE
HLRPGMSVVV SIDTSVEGDE PPDAEAR
|
|---|
| |