| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3620 |
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| Symbol | |
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| ID | 1185285 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 4082701 |
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| End bp | 4083585 |
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| Gene Length | 885 bp |
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| Protein Length | 294 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637394970 |
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| Product | HlyD family secretion protein |
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| Protein accession | NP_793397 |
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| Protein GI | 28870778 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.315743 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAC CGATACTGAC ACTGGGCCGC GTGGTCCTGA CCCTGCTGGT TGTCACTCTG
GCTGCCGTCG TTGTGTGGCG CATGGTGATG TATTACATGT ACGCGCCGTG GACCCGCGAC
GGGCACATTC GCGCCGATGT CGTGCAGATC GCGCCGGACG TGTCCGGCTT GATCCAGAAG
GTCGAGGTGA CGGACAACCA GCCCGTGCAC AAGGGCCAGG TGCTGTTCAC CATCGACCAG
GACCGTTTCC GCCTGACCCT GCGTCAGACC CAGGCAACGG TTGCCGAGCG TCAGGAAACC
TGGGAGCAAG CGCGCCGCGA GAACAAGCGT AACCGCGGCC TGGGCAATCT GGTCGCGCGT
GAGCAACTGG AAGAAAGCCA GTCTCGCGAA GCCCGCGCCC TCTCGGCACT GGGTGAATCC
CGCGTGGCCG TGGATGCCGC ACAACTGAAC CTGGATCGCT CGGTGATCCG CAGCCCGGTG
GACGGCTACC TCAACGACCG CGCGCCCCGC GATCATGAGT TCGTCACGGC CGGGCGGCCG
GTGCTGTCGG TGGTCGATTC GGCGTCGTTC CATATCGACG GCTACTTCGA GGAAACCAAA
CTGGACGGCA TTCATGTTGG CCAGGGCGTG GACATCCGGG TCATTGGTGA CAACGCACGG
CTGACCGGTC ACGTGGTGAG CATCGTTGCC GGCATCGAAG ACCGTGACCG CAGCAGCGGC
TCGAACCTGC TGCCCAACGT CAACCCGGCG TTCAGTTGGG TGCGCCTGGC GCAGCGGATT
CCGGTGCGCA TCGCCTTCGA TGAGGTGCCT GGCAACTTTC GCATGATCGC CGGGCGCACC
GCGACGGTGT CGATCATTGA CGATACGCAG GAGGCGCAAC GATGA
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| Protein sequence | MKKPILTLGR VVLTLLVVTL AAVVVWRMVM YYMYAPWTRD GHIRADVVQI APDVSGLIQK
VEVTDNQPVH KGQVLFTIDQ DRFRLTLRQT QATVAERQET WEQARRENKR NRGLGNLVAR
EQLEESQSRE ARALSALGES RVAVDAAQLN LDRSVIRSPV DGYLNDRAPR DHEFVTAGRP
VLSVVDSASF HIDGYFEETK LDGIHVGQGV DIRVIGDNAR LTGHVVSIVA GIEDRDRSSG
SNLLPNVNPA FSWVRLAQRI PVRIAFDEVP GNFRMIAGRT ATVSIIDDTQ EAQR
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