Gene PSPTO_3549 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3549 
SymbolaefR 
ID1185214 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand+ 
Start bp4005294 
End bp4005896 
Gene Length603 bp 
Protein Length200 aa 
Translation table11 
GC content59% 
IMG OID637394902 
Producttranscriptional regulator AefR 
Protein accessionNP_793329 
Protein GI28870710 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.695719 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCCTCA CCGATCAGAA ACGCGAGTCC ATCGTCCAGG CGGCCATTGC CGAGTTTGGC 
GATCGTGGTT TCGAGATCAC CAGCATGGAC CGTATCGCCG CGCGGGCGGA GGTTTCCAAA 
CGCACGGTGT ACAACCACTT TCCCAGCAAG GAAGAACTGT TCGCCGAAAT GCTTCAGCGC 
CTGTGGAACT GTGCTCCGCC GCAATCGGAG GTGGTTTATC GGCCGCTCGT CAGCCTGCGC 
GAGCAACTGC TGGAATTGCT CTGGGGCAAG ATGCGCAACC TCACTGACAG CAGTTTTCTG 
GACCTTGCGC GGGTAGTAGT AGGTGCCACG ATACACTCGC CGGAACGTGC TCAAGTGTGG 
CTGGCGCGCA TCAACGAGCG CGAAGAAACC TTCAGCGCCT GGATTCGCGC CGCGCAAAAG 
GACGGCCGCC TGAAACCCGT CGATCCAGGC TTTGCAGCGA CGCAGATGCA CGCCCTGCTC 
AAGTCGTTCG CATTCTGGCC GCAAGTAACC TTCAATGCCG CGTTGCTCAC CCCGCAAGAA 
CAGAGCAATG TCGTCGAGTC AGCCCTGAAC ATGTTCCTCG GCTGGTACGA AATACCCGGT 
TGA
 
Protein sequence
MRLTDQKRES IVQAAIAEFG DRGFEITSMD RIAARAEVSK RTVYNHFPSK EELFAEMLQR 
LWNCAPPQSE VVYRPLVSLR EQLLELLWGK MRNLTDSSFL DLARVVVGAT IHSPERAQVW 
LARINEREET FSAWIRAAQK DGRLKPVDPG FAATQMHALL KSFAFWPQVT FNAALLTPQE 
QSNVVESALN MFLGWYEIPG