Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3488 |
Symbol | |
ID | 1185153 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 3936725 |
End bp | 3937750 |
Gene Length | 1026 bp |
Protein Length | 341 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637394841 |
Product | sugar ABC transporter, permease protein |
Protein accession | NP_793268 |
Protein GI | 28870649 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.294731 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCAACG CGATTCTGCA AAACAAGCCG GCCCTGGCGC CGACCGGAAA AAAAAGAAGG CTGCCGACCG AGCTGAGTAT TTTTCTGGTG CTGATCGGTA TAGGCCTGAT CTTTGAACTG TTCGGCTGGA TCGTTCGCGA TCAAAGCTTT CTGCTCAACT CCCAGCGTTT GGTACTGATG ATTCTTCAGG TGTCGATCAT CGGCCTGCTC GCTATCGGCG TCACGCAGGT GATCATCACC ACGGGCATCG ACCTGTCGTC CGGCTCGGTA TTGGCGTTGT CGGCGATGAT TGCCGCGAGT CTGGCGCAGA CCTCGGATTT TTCCCGCGCG GTGTTTCCTT CGCTGACTGA CCTGCCCGTA TGGATTCCGA TCGTGGTCGG GCTCGGGGTG GGGTTGCTGG CCGGCGCCAT CAACGGCAGC ATCATCGCGA TCACCGGCAT CCCGCCCTTC ATCGCCACAT TGGGCATGAT GGTCTCTGCA CGCGGCCTGG CACGCTTCTA CACCGAAGGC CAGCCGGTGA GCATGCTCTC TGATTCCTAC ACGGCCATTG GCCAGGGCGC GATGCCGGTC ATCATCTTTC TGGTGGTGGC GGTCATTTTC CACATTGCGC TGCGCTACAC CAAGTACGGC AAATATACCT ACGCCATTGG TGGCAACATG CAGGCGGCGC GCACCTCGGG GATCAACGTC AAGCGTCACC TGATCATTGT CTACAGCATC GCCGGGCTGC TGGCCGGATT GGCAGGCGTG GTTGCCTCGG CGCGAGCCGC AACCGGCCAG GCGGGCATGG GCATGTCCTA TGAGCTGGAT GCGATCGCGG CGGCAGTCAT CGGCGGCACC AGCCTGGCGG GCGGCGTCGG GCGAATTACC GGCACGGTCA TCGGTGCGCT GATTCTCGGG GTAATGGCCA GCGGCTTCAC GTTTGTTGGC GTGGACGCCT ACGTTCAGGA CATCATCAAG GGTCTGATCA TTGTGGCGGC GGTGGTAATC GATCAATATC GCAACAAGCG CAAGACCAAG CGCTGA
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Protein sequence | MSNAILQNKP ALAPTGKKRR LPTELSIFLV LIGIGLIFEL FGWIVRDQSF LLNSQRLVLM ILQVSIIGLL AIGVTQVIIT TGIDLSSGSV LALSAMIAAS LAQTSDFSRA VFPSLTDLPV WIPIVVGLGV GLLAGAINGS IIAITGIPPF IATLGMMVSA RGLARFYTEG QPVSMLSDSY TAIGQGAMPV IIFLVVAVIF HIALRYTKYG KYTYAIGGNM QAARTSGINV KRHLIIVYSI AGLLAGLAGV VASARAATGQ AGMGMSYELD AIAAAVIGGT SLAGGVGRIT GTVIGALILG VMASGFTFVG VDAYVQDIIK GLIIVAAVVI DQYRNKRKTK R
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