| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3464 |
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| Symbol | |
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| ID | 1185129 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 3908246 |
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| End bp | 3910801 |
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| Gene Length | 2556 bp |
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| Protein Length | 851 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637394817 |
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| Product | DNA ligase, ATP-dependent, putative |
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| Protein accession | NP_793244 |
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| Protein GI | 28870625 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTCAAGC CAGCCAGTGA ATACACGCGC AAGCGCAACT TTGACGTCAC CTCCGAGCCT
TTGGAGAGCA AACGTAAAGG CAAGGCGCGG TCCGGTGCAC TGAGTTTTGT GATTCAGAAG
CACGATGCGC GCAACCTGCA TTACGACTTT CGGCTGGAAC TGGACGGTAC GCTGAAGAGC
TGGGCGGTGC CCAAAGGGCC CAGCCTGGAC CCGAAACAGA AGCGTCTGGC CGTGCATGTC
GAAGATCATC CGCTGGACTA CGCCGCTTTT GAAGGCAGCA TTCCGAAGGG CCAGTACGGC
GGAGGCGATG TAATCGTCTG GGACAGGGGC ATCTGGCAAC CCCATGGTGA TCCACGCAAG
ACCTATGAGG ACGGCAAACT CAAGTTCACC CTGATCGGCG AAAAACTCAG TGGCGAGTGG
GCGCTGGTGC GCACTCGGCT CAAGGGCAGT GGCAGCAAGG AGCAGTGGCT GCTGATCAAG
GAAAAGGACG ACATCGCGCG ACCTGCCGCC GAATACGACA TCACCGAGGC GCAACCGCAA
AGCGTGATCA GCGGTGCGCA CGTCGGGGCA GGGCGTTCAG CGCCAGCAAA GCCCAAAGCC
AAGGCTGTTG AAGCGAAGCC TGCGCGCAAG CCCGCACCCA AAAAGGCGAA AGCCGTTTTC
CCGGACACGT TTGCGCCGCA ACTGGCGACA CTGGTCGATG CGCCGCCTGC GGGCGACTGG
CTGTACGAGA TCAAGTTTGA CGGCTATCGC ATGCTGACGC GTATCCAGAA TGACGAGGTG
CGTCTGTTCA CCCGTAACGG CAACGACTGG ACTGACCAGT TGCCCGAGCT GACCAAGGCG
CTCAAGGGCC TGAAGTTGCA AGACAGTTGG TTCGACGGCG AAGTGGTGGT GCTCGACGAG
CAAGGGCTGC CGGATTTTCA GGGGTTGCAG AATGCCTTTG ATGAGGGGCA CAGCAAAAAT
ATTTTCTATT ACCTGTTCGA CATGCCGTTT CTGAGCGGCG AAGACCTGCG CGAAGTGCCT
CTTGAGCAGC GTCGCGACGC TTTGAAACAA GTGCTCGGCA GCCAGCGCAG CCGCTTGCTG
CGCTATTCGG ATGCGTTTCA GGCCGGGCAT CAGGACATCG TGGCCAGTGC TGCGGCGATG
GGCCTGGAGG GCGTAATCGG CAAGCGCGCT GGCAGCGCGT ACGTTGGCAA GCGCAATGCC
GACTGGATCA AGCTCAAATG CCGGTTGCGC CAGGAATTCG TGATCGTCGG TTATACCGCG
CCACAAGGCA GCCGCTCGGC CTTCGGCGCG CTGTTGTTGG CGGTCAATGA CGATGCTCAG
GGGCTGGTGT ATGCCGGACG GGTCGGCACC GGGTTTACCG AGGCGACGCT CAAACACGTG
CACAAGCAAC TGAAACCGCT GCACCGCGAG GAATCGCCCT TGGCGAAAAA ACTGACCTCG
GCGCAGGCGC GCGGCGTGCA GTGGGTCGAG CCGACGCTGG TCTGCGAAGC TGAGTTTGCG
CAGTGGACTC GCGAGGGCAT CGTGCGTCAG GCAGCGTTTT TCGGCCTGCG CGGTGACAAG
CCAGCTGGCG ATGTGGTGCG TGAAGACGCT CAGCCAGCCG AGGCTGCGTC AGTCACTCCT
GAGCCCTCCA GGCAGCCCGG CAAGAAAACT GCCCGAGGCA AGGTTGATGT GGCGGGCACT
GGCATCAGTC ATCCGCAGCG GGTGATCGAC AGCACTACAG GCACGAAGAA AATCGAGCTT
GCGCAGTTTT ACGAGTCTAT CGCCGACTGG ATTCTGCCGT ACCTGAACAA GCGGCCAGTG
GCATTGCTGC GCTGCCCGGA AGGCATCGAC GGCGAGCAGT TTTTTCAGAA ACACGCCGAG
CACCTTGCCA TACCGCATAT CAGGCAGCTG GATCGGGCGC TGGACCCCGG CCACGCCGCG
CTGATGGAGA TCGACTCTGT GCAGGCGCTG GTGGGCGCGG CGCAGATGGG CGCCATCGAG
TTGCACACCT GGGGCGCGAC CCGCGACAGG ATCGAAACAC CGGATCATTT TGTGCTGGAC
CTTGACCCAG ACCCGGCGCT GCCCTGGCGC AGCATGATCG AGGCCACGCA AATGGTTCTC
GCCGTACTGG AGGAGCTGGG GCTTGAGGCT TTTCTCAAGA CCAGTGGCGG CAAAGGCATG
CACATTATTG TGCCGCTGGC GCGACAGGCC GAGTGGGACA CCGTGAAAGC CTTCGCCAAG
GCCATCGCCG AGTTCATCAG CCGTCAGTTG CCGGAACGCT TCACAGCCAC AATGGGGCCG
AAAAACCGGG TCGGCAAGAT TTTCATCGAT TACCTGCGCA ACAGTCGTGG CGGCAGCACA
GTGACCGCCT ATTCGGTACG CGCCCGGCCG GGTTTGCCGG TCTCGGTGCC GATTGCGCTG
CATGAGCTGA CCGGTCTGAC GTCGTCGGCG CAATGGGACA TCACCAACCT TGAGCAACGC
TTGAGCCAGC TCAAGAGTGA CCCGTGGGCC GGTTACAGCA ACCGGCGCAA AATCACGCAA
AAGATGTGGA AACAGCTGGG GGCTAAACAG CCTTGA
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| Protein sequence | MVKPASEYTR KRNFDVTSEP LESKRKGKAR SGALSFVIQK HDARNLHYDF RLELDGTLKS
WAVPKGPSLD PKQKRLAVHV EDHPLDYAAF EGSIPKGQYG GGDVIVWDRG IWQPHGDPRK
TYEDGKLKFT LIGEKLSGEW ALVRTRLKGS GSKEQWLLIK EKDDIARPAA EYDITEAQPQ
SVISGAHVGA GRSAPAKPKA KAVEAKPARK PAPKKAKAVF PDTFAPQLAT LVDAPPAGDW
LYEIKFDGYR MLTRIQNDEV RLFTRNGNDW TDQLPELTKA LKGLKLQDSW FDGEVVVLDE
QGLPDFQGLQ NAFDEGHSKN IFYYLFDMPF LSGEDLREVP LEQRRDALKQ VLGSQRSRLL
RYSDAFQAGH QDIVASAAAM GLEGVIGKRA GSAYVGKRNA DWIKLKCRLR QEFVIVGYTA
PQGSRSAFGA LLLAVNDDAQ GLVYAGRVGT GFTEATLKHV HKQLKPLHRE ESPLAKKLTS
AQARGVQWVE PTLVCEAEFA QWTREGIVRQ AAFFGLRGDK PAGDVVREDA QPAEAASVTP
EPSRQPGKKT ARGKVDVAGT GISHPQRVID STTGTKKIEL AQFYESIADW ILPYLNKRPV
ALLRCPEGID GEQFFQKHAE HLAIPHIRQL DRALDPGHAA LMEIDSVQAL VGAAQMGAIE
LHTWGATRDR IETPDHFVLD LDPDPALPWR SMIEATQMVL AVLEELGLEA FLKTSGGKGM
HIIVPLARQA EWDTVKAFAK AIAEFISRQL PERFTATMGP KNRVGKIFID YLRNSRGGST
VTAYSVRARP GLPVSVPIAL HELTGLTSSA QWDITNLEQR LSQLKSDPWA GYSNRRKITQ
KMWKQLGAKQ P
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