| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3437 |
|---|
| Symbol | |
|---|
| ID | 1185102 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 3876731 |
|---|
| End bp | 3878539 |
|---|
| Gene Length | 1809 bp |
|---|
| Protein Length | 602 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637394790 |
|---|
| Product | peptidase, M24 family protein |
|---|
| Protein accession | NP_793217 |
|---|
| Protein GI | 28870598 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0006] Xaa-Pro aminopeptidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.193845 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACGC AATCCAACGC CAGTTCAGAA GTGGCCGTAC GCTTGGCGCG CACACGCGCC
TTGATGAGCA GGGAGCGCAT CGATGCCTAT CTGGTGCCGT CGGCGGATCC GCATCTCTCC
GAGTATCTGC CTGGCTATTG GCAGGGTCGT CAATGGCTGT CAGGTTTTCA CGGGTCGGTC
GGTACACTGA TCATCACCCA GAAGTTTGCA GGCGTATGGG CGGACAGCCG CTATTGGGAG
CAGGCAACCA AGGAGCTTGC CGGCAGCGGT ATCGAACTGG TCAAGCTGAT GCCTGGCCAG
CAAGGCCCGC TGGAGTGGCT GGCTGATCAG GCCACCGCTG AAACGGTGGT GGCGGTCGAT
GGCGCGGTTC TGGCGGTTGC TTCTTCACGC ACGCTGGCCA GCAAGCTCTA TGAGCGGGGC
GCGCGTTTGC GCACTGACAT CGACCTGCTT ATCGAACTGT GGCCGGACCG TCCTGCCTTG
CCGACTCAAC CGATCTACGA ACATCTGCCT CCGCAGGCTT CGCTTGATCG TGGCGAAAAA
CTCACTCGCG TTCGTCACTC CATGGGCGAG CGCAACGCGG ACTGGCATTT TATCGCGACG
CTGGATGATA TTGCCTGGCT GTTCAATCTG CGCGGCGCGG ACGTTTCCTA CAATCCGGTG
TTCATATCGT TTGCCCTGAT CGGCCCGCAC AGCGTCACGT TGTTTGTGGA CGCGAAGAAA
GTCCCGGGTG ATGTAAGGGC CAGCCTTGAG CGCGACGGTA TCAATCTCAT GGAGTACACC
CAGATCGGCG CGGCGCTGCG TGAGTTGCCG AAAGACGCGC GGCTGCTGGT CGATCCGGCT
CGTGTGACCT GTGGGCTGCT CGATTATCTG GACAGTGAAG TCACCCTGGT CGAGGGATTG
AACCCGAGCA CATTGCTGAA ATCGCAAAAG ACCGAGATTG ATGCCGGTCA TATCCGTCAG
GCTATGGAGC AGGATGGCGC AGCGTTGTGC GAATTCTTTG CCTGGCTGGA CAGCGCGCTG
GGGCAAGAGC CTGTCAGCGA AGTAACGGTT GACGAAAAAC TCACCCAGGC ACGGGAACGT
CGCCCCGGCT ACATGTCGCC CAGCTTCGCC ACTATCGCCG GCTTCAATGC CAACGGGGCC
ATGCCGCACT ACCGCGCGAC CGAAGCAGAA CATGCGCAGA TCGAGGGTGA CGGGTTATTG
CTGATCGACT CGGGTGGGCA GTACCTGGGC GGCACCACCG ATATCACCCG CATGGTGGCG
ATAGGCACGC CAAGCACCGA GCAGAAGCAG GACTGCGCCA GGGTTCTCAA GGGTGTGATC
GCGCTGTCGC GTACTCATTT TCCAAAGGGG ATCTTGTCGC CGCTGCTGGA TGCCATTGCC
CGCGCGCCGA TCTGGAGCGA CGGCGTCAAC TATGGACATG GCACCGGGCA CGGTGTGGGG
TATTTCCTGA ATGTGCATGA AGGGCCGCAG GTCATCGCCT ATCAGGCACC GGCGACGCCA
CAGACGGCGA TGCTGCCTGG CATGATCACG TCCATAGAAC CAGGTACCTA CCGGCCCGGG
CGCTGGGGCG TGCGTATCGA AAACCTGGTG ATCAACCAGC CAGCCGGTGC AACCGAGTTC
GGCGAGTTTC TGCGCTTTGA AACCCTGACC CTGTGCCCGA TCGATACCCG CTGCATTGAG
GTCTCGATGC TCAACGAAGA AGAGCGCAAC TGGCTGAATG ACTACCACGC AAATGTGCTG
GCACGGCTGA GCCCGCTGTT GCAGGGGGCT GCACTGCAAT GGTTGCAGGC CCGGACAACG
GCCATCTGA
|
|---|
| Protein sequence | MSTQSNASSE VAVRLARTRA LMSRERIDAY LVPSADPHLS EYLPGYWQGR QWLSGFHGSV
GTLIITQKFA GVWADSRYWE QATKELAGSG IELVKLMPGQ QGPLEWLADQ ATAETVVAVD
GAVLAVASSR TLASKLYERG ARLRTDIDLL IELWPDRPAL PTQPIYEHLP PQASLDRGEK
LTRVRHSMGE RNADWHFIAT LDDIAWLFNL RGADVSYNPV FISFALIGPH SVTLFVDAKK
VPGDVRASLE RDGINLMEYT QIGAALRELP KDARLLVDPA RVTCGLLDYL DSEVTLVEGL
NPSTLLKSQK TEIDAGHIRQ AMEQDGAALC EFFAWLDSAL GQEPVSEVTV DEKLTQARER
RPGYMSPSFA TIAGFNANGA MPHYRATEAE HAQIEGDGLL LIDSGGQYLG GTTDITRMVA
IGTPSTEQKQ DCARVLKGVI ALSRTHFPKG ILSPLLDAIA RAPIWSDGVN YGHGTGHGVG
YFLNVHEGPQ VIAYQAPATP QTAMLPGMIT SIEPGTYRPG RWGVRIENLV INQPAGATEF
GEFLRFETLT LCPIDTRCIE VSMLNEEERN WLNDYHANVL ARLSPLLQGA ALQWLQARTT
AI
|
|---|
| |