Gene PSPTO_3363 details

Gene Information

• Locus tag: PSPTO_3363
• ID: 1185022
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 3801024
• End bp: 3801770
• Gene Length: 747 bp
• Protein Length: 248 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 637394714
• Product: type II and III secretion system family protein
• Protein accession: NP_793146
• Protein GI: 28870527

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.00438099
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCAATCC GTAACCTGCT TAACATAGTG CTCACCTCAG TACTGATCGC ATTCAGCGCT 
CAGACCCTCG CTGCGACCGA AGTGGTCCCA CTCAGCTACC GCACCAGCGC TGATCTGCTA 
CCGGTGGCCA AATCTTTTCT GGGTGCCGAT GGTTCAGTCA GCGCCTATGG CAATCAGCTG 
ATCGTCAATG CAGATTCGCG CAAGATCGAA GAACTTCGCA GCCTGATATC GCAACTGGAT 
ACCGCGCCAA AGCGCTTGTT GATCAGCGTC GACACCAGCG AAAACGCCAC GAGCAGCAGC 
AATGGCTCAC GCGTTATCGA TTACGGCACC GCGAGCCGCG ACGGCGGCGG CGTGCAGCAG 
GTTCAGACCA GCGAAGGTAC GCCGGCATTG ATTCAGGTCG GACAGAGCGT CCCGCTGACG 
TCTTCGTCCA CAGACTCCTA CGGTTACTCA CAGAGCAACA CTGAATACCG CAATGTCACC 
CAAGGGTTCT ATGTCACGGC CAGCGTGACC GGCGACAACG TTCACCTGAC CATCAGCACC 
AACCATGACC GCATGAGCCA GGAACGCCCT GACGCCATCA AGGTGCAAAG TACCGACAGC 
CAGGTGAGCG GCCGTCTCGG CGAGTGGATC ACACTGGCGA GCAATAGCGA TCAATCCGCT 
GCCGATCAGA GAGGCTTTGC CCAACGCTAT TCCACTCAGG GTCGCAGCGA CATGATTTTG 
CGCGTGAAGG TCGAAAGTCT CGAATAG 

 

Protein sequence

MSIRNLLNIV LTSVLIAFSA QTLAATEVVP LSYRTSADLL PVAKSFLGAD GSVSAYGNQL 
IVNADSRKIE ELRSLISQLD TAPKRLLISV DTSENATSSS NGSRVIDYGT ASRDGGGVQQ 
VQTSEGTPAL IQVGQSVPLT SSSTDSYGYS QSNTEYRNVT QGFYVTASVT GDNVHLTIST 
NHDRMSQERP DAIKVQSTDS QVSGRLGEWI TLASNSDQSA ADQRGFAQRY STQGRSDMIL 
RVKVESLE