| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3300 |
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| Symbol | |
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| ID | 1184958 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 3731816 |
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| End bp | 3733003 |
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| Gene Length | 1188 bp |
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| Protein Length | 395 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637394650 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | NP_793083 |
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| Protein GI | 28870464 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.512251 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTCTTT GCTTGGCGAC GCTTTTGCGT TCGTGCTGCC GTGTGCCCGG AAATATTCGG
TCACAGCGCT TCAATTCCTT CCAGCCCGGT CTGGTGCTGG GTTTCATCTC GCTGCTCTCG
CTCGGCGCTT GCTCCGCAGG GAAACCCGCA GAAAAGGCGC TGGTGCGGGT CGCGGTGCAA
CCGGTTGCAT CGCTAGACGT GGCCAGCAGC GTAATGCTGA CGGGCGATAT TCAGGCGCGA
AAAGTCACCG AACAGTCCTT CCGTGTGTCC GGCAAGCTGG TCAAACGTTA TGTGGATGTC
GGCGACCGGG TGCGGGCAGG GCAAGTACTT GCCAGACTCG ACCCGCGAGA ACAGAAGACC
GATCTGGCGT CGGCCAATGC AGAAGTGGCC GTGCGGGAGT CACGCTTGCA CCTTGCCGAG
CAGAATTATC AGCGTCAGCA ATTACTGCTG CCCAAGGGCT ACACCAACCT CAGTGAATAC
CAGAAGGCAC GTTCCGGCCT GGACAGTGCG CGCGGGGATC TGGCGGCGTT GCGAGCGCAG
CAGGCCAACG CGCGCGACCA GGTGGGCTAC ACCGAGCTGT TCGCGGTAGC CGATGGCGTC
ATCACTGCGC GCCATGCAGA GGAAGGTCAG GTGGTACAAG CCGCCACGCC GGTTTTCAAC
CTTGCCCATG ACGGCCAGCG CGAGGCGGTA TTTTCGGCGT ATGAATCGCT GCTGGGTGCC
GACCAGACCG AAGGCACGGT AACGATCAGC CCACTGGGGC AACCGAGCAT TCAATTGAGC
GGCTCCATCC GCGAGATCAC ATCGATTGTT TCCGCCGCAA GCGGCACACT ACGGGTACGC
GTTGCCTTGC CGGACGCCGC CATCGCACCG GCGCTGGGCT CGGTGGTCAG CGCACGCTTG
CAGACCCGAT CGCAGCGGGC ATTCGCCCTG CCCTGGTCGG CGTTGAGCCG CACCCAGGGT
CAGCCGGCAG TCTGGCGGCT GGACGACCAG TCGAAAGTCC GCCTGACGCG CGTGAAAGTG
CTGCGTTACG AACAGGGCCA GGTGATCGTT TCCGAAGGGC TGAACGAAGG CGATCGGGTG
GTTTCCCGAG GGCTGCAGTT TCTCTATCCC GGACAACAGG TCGAGGTGGC CGAGCAAGCG
TCAGTCAAGC CCGCCGTCTC GCTGGCAACA TCGGAGCCTG CGCAATGA
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| Protein sequence | MTLCLATLLR SCCRVPGNIR SQRFNSFQPG LVLGFISLLS LGACSAGKPA EKALVRVAVQ
PVASLDVASS VMLTGDIQAR KVTEQSFRVS GKLVKRYVDV GDRVRAGQVL ARLDPREQKT
DLASANAEVA VRESRLHLAE QNYQRQQLLL PKGYTNLSEY QKARSGLDSA RGDLAALRAQ
QANARDQVGY TELFAVADGV ITARHAEEGQ VVQAATPVFN LAHDGQREAV FSAYESLLGA
DQTEGTVTIS PLGQPSIQLS GSIREITSIV SAASGTLRVR VALPDAAIAP ALGSVVSARL
QTRSQRAFAL PWSALSRTQG QPAVWRLDDQ SKVRLTRVKV LRYEQGQVIV SEGLNEGDRV
VSRGLQFLYP GQQVEVAEQA SVKPAVSLAT SEPAQ
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