| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3284 |
|---|
| Symbol | |
|---|
| ID | 1184942 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 3711465 |
|---|
| End bp | 3712790 |
|---|
| Gene Length | 1326 bp |
|---|
| Protein Length | 441 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637394634 |
|---|
| Product | major facilitator family transporter |
|---|
| Protein accession | NP_793067 |
|---|
| Protein GI | 28870448 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2271] Sugar phosphate permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGACG GCACAGATTC GGTTCTGAGC TCAGCCGTCT CGAAGGTCAA ACGTCACGTC
CTGCCGCTTT TCGTGATCAT GTTTATCGTC AACTACATCG ACCGGGTGAA CATCGGCTTC
GTGCGCTCGC ACATGGAGCA CGACCTCGGT ATCGGCGCTG CCGCCTACGG GCTGGGTGCC
GGACTGTTCT TCATCGGTTA CGCGCTGTTT GAAGTCCCCT CCAACATCCT GCTGCAGAAA
GTCGGGGCGC GTATCTGGCT GACGCGAATC ATGCTCACCT GGGGCATCGT TGCCGCCTGC
ATGGCCTTCA TCCAGAACGA AACACACTTC TACATCCTGC GCTTTCTGCT CGGCGTGGCC
GAAGCGGGTT TCTTTCCGGG CGTAATCTAC TACTTCACCC GCTGGCTGCC CGGCGTCGAG
CGCGGCAAGG CGATTGCCAT TTTTCTCAGC GGCTCGGCCA TCGCTTCGCT GATCTCCGGC
CCGCTGTCCG GTCTGCTGCT GCAAATCACC GGTTTTGGCC TGAAAGGCTG GCAGTGGATG
TACTTCATCG AAGGCATGTT CTCGGTCGGG CTGTGCTTCT TCGTCTGGTT CTGGCTGGAT
TCCAAGCCGC ACGACGCCAA GTGGCTGACC CGCGAAGAAC AGGACGCGCT GGTCAACGCA
ATCGATGCCG AACAGGCTGC TCGCGAAGCC GCAACACCGG TCAAGGCAAC CCTCGGTAAA
CTGCTCAAGG ACAGTCAGAT CATCCTGTTC TGCCTGATCT ACTTCTTCAT TCAGTTGACC
ATCTACGCAG CGACCTTCTG GCTGCCGAGC ATCATCAGGA AGATGGGCAA CATGACTGAC
TTTGAAGTCG GCATGTTCAA CTCGATTCCG TGGCTGCTGT CGATCATCGG CATGTACGCT
TTCGCCACAC TGTCCGCCAA ATGGAAGCGT CAGCAGGCCT GGGTCGCCAT CGCCCTGCTG
ATTGCCGCTG CCGGGATGTT CATGTCCACC ACCGGCAGCC CGATCTTCGC CTTCGTTGCC
ATCTGCTTTG CGGCGCTGGG TTTCAAGTCC GCGTCGTCGC TGTTCTGGCC TATTCCGCAG
GCGTATCTGG ATGCACGTAT CGCCGCTGCG GTCATTGCGC TGATCAACTC AGTGGGCAAC
CTCGGCGGCT TTGTCGCGCC GACCACCTTC GGCTTGCTGG AAGAGCACAC CGGCTCGATT
CAGGGCGGGC TGTATGGCCT GACTGCAACA TCGATCATCG CGGCAATCAT CGTCTTCGCC
GCGCGCAACA CCCCCAAGGC GGGCGCCACT CCGGTGGCCG CTATCCAGAC CCCGGCCACC
CATTGA
|
|---|
| Protein sequence | MADGTDSVLS SAVSKVKRHV LPLFVIMFIV NYIDRVNIGF VRSHMEHDLG IGAAAYGLGA
GLFFIGYALF EVPSNILLQK VGARIWLTRI MLTWGIVAAC MAFIQNETHF YILRFLLGVA
EAGFFPGVIY YFTRWLPGVE RGKAIAIFLS GSAIASLISG PLSGLLLQIT GFGLKGWQWM
YFIEGMFSVG LCFFVWFWLD SKPHDAKWLT REEQDALVNA IDAEQAAREA ATPVKATLGK
LLKDSQIILF CLIYFFIQLT IYAATFWLPS IIRKMGNMTD FEVGMFNSIP WLLSIIGMYA
FATLSAKWKR QQAWVAIALL IAAAGMFMST TGSPIFAFVA ICFAALGFKS ASSLFWPIPQ
AYLDARIAAA VIALINSVGN LGGFVAPTTF GLLEEHTGSI QGGLYGLTAT SIIAAIIVFA
ARNTPKAGAT PVAAIQTPAT H
|
|---|
| |