| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3182 |
|---|
| Symbol | |
|---|
| ID | 1184839 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 3573111 |
|---|
| End bp | 3574022 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637394537 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | NP_792971 |
|---|
| Protein GI | 28870352 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.795153 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGATTACGG ATCTCAATGA TGTCGCGCTG TTTGTGCAGG TGGTGCGCAG CGGCAGTTTC
GCCCAGGCCG CGAGGCAGCT GGGCATGCCG TCGAATACTG TCAGTCGGCG GATTCAGCAC
CTGGAGGTGC AGCTTGGCAC GCGCTTGTTG CAGCGCTCCA CGCGCAAGCT GGTGTTGACC
CAGACAGGTG AGCACTTTTA TGAGCGTTGC ACGGCGGCAG TCGATGGCCT GATGAGTGCC
GCCGAGCAGC TTGTCTCAGG GCGAGAAGAG CCCAGCGGCC GAGTGCGCAT CGCGGCCATG
GCGGATTTTT TTGATTTTTT CTCGATGGAC TGGGTCGCCG ATTTTCTCGC CCGCTACCCA
CGCGTACAGC TTGAATTCGT GCTCAGCGAC GAGCGCGCCG ATCTGATCGC CGACCGGCTG
GACATCGCGT TCCGGGGCGG CCCTTTGCAG GATTCAGGTT ATGTGGGGCG TCAACTGATC
GAAGAGGCGC GCGACGGCAT GGTTGCCAGC CCTGCCTATC TCGCAACTCA CGGCATGCCC
GATTCGCTGG AGAGTCTGCA GGCGCATGAC TGCGTCAGCG CAGCGTATCC AGGTGGTTCC
ACCACCTGGC GAATGCTCGG GCCGGACGCG AAAATACACG ATGTGCAGCT CTCCAGTCGC
TTCAACGCCA ACACCGCTCA GGCATTGCGC AAAGCGACGC TCGCCGGTCT GGGTATCGCG
TTGCTGCCAG CGACCCTGAT TCGTGCCGAT CTGCGTAACG GGTTGCTGGT GCCGGTACTG
GCGCAGTATC AGCGCACCAG TCATGGCCTG CATGTGCTTT ACCCCAGTCG GCAACAGTTG
CCTCTGGCGG TATCGGCGTT TATCGGGTTG GTGATGGAGA AACTCAGGGT CAACGCGTTT
CCCGCGCAGT GA
|
|---|
| Protein sequence | MITDLNDVAL FVQVVRSGSF AQAARQLGMP SNTVSRRIQH LEVQLGTRLL QRSTRKLVLT
QTGEHFYERC TAAVDGLMSA AEQLVSGREE PSGRVRIAAM ADFFDFFSMD WVADFLARYP
RVQLEFVLSD ERADLIADRL DIAFRGGPLQ DSGYVGRQLI EEARDGMVAS PAYLATHGMP
DSLESLQAHD CVSAAYPGGS TTWRMLGPDA KIHDVQLSSR FNANTAQALR KATLAGLGIA
LLPATLIRAD LRNGLLVPVL AQYQRTSHGL HVLYPSRQQL PLAVSAFIGL VMEKLRVNAF
PAQ
|
|---|
| |