| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3172 |
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| Symbol | |
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| ID | 1184829 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 3564236 |
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| End bp | 3565597 |
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| Gene Length | 1362 bp |
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| Protein Length | 453 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637394528 |
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| Product | hypothetical protein |
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| Protein accession | NP_792962 |
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| Protein GI | 28870343 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0893735 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCCACG CCGGCGCAAG ATTTACCCAA GGCAGCGTAG CGCAGCATAT CGTTGTGACC
GCCAGTACCA GCGCCTTGAG CCTGTTTGCG ATATTTCTCG TCGACATTCT GACGCTGGTC
TATGTCTCGA TGCTGCACGA TCCGGTGCTT CTGGCTGCGG TGGGCATCGC CAAGGTGCTG
CTTTTTTTCA ACTCGGCACT GACCACCGGC CTGATCATCG CAGCAGCAGC GGTGCTGTCG
GAGCGCATAG GCCACCGGGC CGCCAGGTCT GTGCCGCGAC TCACCGCCAG CCTTATGCTG
ATGGTCGTCA TGGTCTCGGG TCTGGGCGCT GCGCTGCAGT TGGCGCTGGT GGTGCCGATC
ACTCACTGGC TGGGGGCCGA GGCCGCCACT TATGACGCGG CGCGCAGCTT CATCTGGCTG
ACCCTGCCGT TTACCGTGTT ACAGGCGGTT ATGCAGATGT CGGCGCAGAT GCTCAGAACC
ACCGGTGATA ACCGTCGGGC GCTGGCCGTG GTGCTGTCAG CCGCTGCCAC GCTGGCGGTC
GCCGACCCGT TGTTCATTTT TGTTCTGGAT CTGGGCCTGA AGGGCGCAGG CATTGCATTT
GCGGTGTCGG CCGGCGTTTC CGCCTCAATC GGCGTGTATT GGGTTCGCCG TCGCATAGGG
CTGGTGTTCA CGCGCAACCT CAAGCTGTTG CGCCTGCATG CCGGGCGTAC TTTCCGGCTC
GCTCTTCCGG CAATGGCCGC AAACCTGGCG ACGCCTGTCG GTCTGGCTTA TCTTGTTGCA
TCGCTGTCTA CGTTCGGCAC TTCAGCGCTG GCCGCCATGA CCGTGCTGGA CCGGGTCCTG
CAATTTTCCT ACTGCGCTTT TTTTGCACTG CCCGGTGCAC TGGCTCCGGT GCTTGGGCAG
AATATCGGTG CCAATCGGGA TGATCGGGTC CGTTCGGCCA TCGTCTTCAG CCGGCGCATG
GTGGTCTTTT ACGGATTGGC CGTCTGGCTT GTGTTGATAC TGTGCGGCGG CATGATTGCC
GATCTGTACC AACTCGGCGT CGAAGCCCGA GCGGTATTCA TTGCCTTCTG CTGGTGGGGC
GGCGGCCTCT GGGTGGTGAT AGGGCTGGAT TTTGTCGCCA TTGCCGTGTT CATCACCATG
AAAAAGTCAT GGTGGGTGGC GGTGTTCGCC TGGCTCAGAG CGACAGCAGG TACAGTGCCG
TTCGTGCTGG CCGGCACGCA CTGGTTCGGC AGCAGTGGCG CGTTGCCTGG CATGTTCGCC
GGCAATGCGG TCATTGCACT GATCTCGATC GCTACCGCAT CGCTGACAGC AAAACGGTTT
TATACCGGCA GGGCCAGGGG CATGAACGCC CAGGCACATT GA
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| Protein sequence | MAHAGARFTQ GSVAQHIVVT ASTSALSLFA IFLVDILTLV YVSMLHDPVL LAAVGIAKVL
LFFNSALTTG LIIAAAAVLS ERIGHRAARS VPRLTASLML MVVMVSGLGA ALQLALVVPI
THWLGAEAAT YDAARSFIWL TLPFTVLQAV MQMSAQMLRT TGDNRRALAV VLSAAATLAV
ADPLFIFVLD LGLKGAGIAF AVSAGVSASI GVYWVRRRIG LVFTRNLKLL RLHAGRTFRL
ALPAMAANLA TPVGLAYLVA SLSTFGTSAL AAMTVLDRVL QFSYCAFFAL PGALAPVLGQ
NIGANRDDRV RSAIVFSRRM VVFYGLAVWL VLILCGGMIA DLYQLGVEAR AVFIAFCWWG
GGLWVVIGLD FVAIAVFITM KKSWWVAVFA WLRATAGTVP FVLAGTHWFG SSGALPGMFA
GNAVIALISI ATASLTAKRF YTGRARGMNA QAH
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