Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3171 |
Symbol | |
ID | 1184828 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 3563563 |
End bp | 3564213 |
Gene Length | 651 bp |
Protein Length | 216 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637394527 |
Product | transcriptional regulator, TetR family |
Protein accession | NP_792961 |
Protein GI | 28870342 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.323724 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTCATCG AAGAATCAGG GAATGAATCC GAAGCATCGG TAGCGCCCAA GCGACGCCGG GCGCCCAAGG GCGACATGCG CAGAAAGGCC TTGCTGGACG CTGCCACGGT GGTGTTCGCC AGAGACGGCT ACTCGAGTGC ATCCATGCGC GAGGTTGCGC TGCTGGCCGG CATCACGACG GTTGGCTTGT TGCATCACTT TCCCAACAAG GAAGCGCTGC TCAGCGCGTT GCTGGAGCGA AGGGATCAGC GGGTCACGTC CAGGTTTCAG GACATGGTCA CCGAACTGAC GCTTGACGGG TTTCTGAAGT TTCTCAAGCT GAGCATGAGC TTCAGCGTCG AAAATGCCGA TGAGTGCCAG GCTGCGCTGT TGATGAACAC CGAAAGCCTC TCACCTTCAC ACCCGGCCTG TTCATGGCAC CGTGAGCGAT TTCAGATGAC CCACGAGCAT GCCCGCGGTC ATCTGAACGC GTTGATAGAA GCAGGGGAGG TTCGTGCGGA CATCAACGTG AAAGCCCTGG CCCAGGAAAT CTTCTCGGTC ATGGACGGTT TGCAGATTCA GTGGCTGAGA AGCCCGGACG ACGTGGATGT CATGGCGGTG TTCGAGGTTT ACGTGCAGCG TCTGGGAAGG GATATCAAGG CTCATCCCTG A
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Protein sequence | MVIEESGNES EASVAPKRRR APKGDMRRKA LLDAATVVFA RDGYSSASMR EVALLAGITT VGLLHHFPNK EALLSALLER RDQRVTSRFQ DMVTELTLDG FLKFLKLSMS FSVENADECQ AALLMNTESL SPSHPACSWH RERFQMTHEH ARGHLNALIE AGEVRADINV KALAQEIFSV MDGLQIQWLR SPDDVDVMAV FEVYVQRLGR DIKAHP
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