Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3081 |
Symbol | |
ID | 1184738 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 3463360 |
End bp | 3464283 |
Gene Length | 924 bp |
Protein Length | 307 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637394441 |
Product | transcriptional regulator, LysR family |
Protein accession | NP_792875 |
Protein GI | 28870256 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.666211 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCAAATTT CTGACATTGA GGTGTTCGCG GCCATCGCCT CCAGCAGGAG CCTGTCCGAA GCAGCACGGC GACTCGGGTT ATCTCCGATG GCGGTTTCCA GACGCCTGGC TGCGCTGGAA AACGACTTGG GCGTGAGGCT GGTTCACCGA ACAACCCGCT CGGTATCACT GACCCCGGAA GGCGAAGTTT TTCTGCCTCA CGCCAAGACG ATGCTGCAAG CAAGCGAGGC CGCCCGTGCC ACGCTGAAAG CAGACGCAGG CACTGCCAGC GGCATTTTGC GAGTGACAGC ACCCAGCGTG TTTGGCCAGA CAGTCATCAT GCCGCTGCTG CCCGAATTGA TGCTGGAAAA TCCGGCATTG AGCATCGACC TGACGCTTTC GGACAGCATC GTCGACATTG CCGGGCTGGG GATCGATGTC GCCATCCGGA TTGCCACGAT ACGCGACTCG GCCTTGGTGG CCCGGTCGTT GGCACCCAAC CCTCGGGTCG TGTGTGCAAG CCCCGACTAC CTTGTGCGGC GCGGCACGCC GACGGTACTG GACGATCTCA GGCACCACCC GTGTATTGCC TTGCATGGCA TGCCTTACTG GTCTTTTACC CGGGGCGGCG AGCCCGTGAC CATTCGGGCG CAGGGGTCTT TTTCTGCCAA CAGTGTCGAA GCCGTCCGTA CGGCCAGCAA ACAAGGCCTG GGGCTGGCCA TGCTGACCTA TTGGGATATT CAGCAGGAAA TCAGGGAAGG CAGTCTTCGG CAGATAGACT TTGAAGATGC CCTCCCCGAA CAACTGTCGA TCACGGCGGT GCTGCCAACA CGCCAACGTG TTCCTCACCG GGTGCGCCTG TTCGTTGACC GCCTGGAAGC AGAGCTTCAG AAACACAACG CAGGCTCAAC GGGTACAGCC TCGTCAACGA ACGAACCGGC ATAA
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Protein sequence | MQISDIEVFA AIASSRSLSE AARRLGLSPM AVSRRLAALE NDLGVRLVHR TTRSVSLTPE GEVFLPHAKT MLQASEAARA TLKADAGTAS GILRVTAPSV FGQTVIMPLL PELMLENPAL SIDLTLSDSI VDIAGLGIDV AIRIATIRDS ALVARSLAPN PRVVCASPDY LVRRGTPTVL DDLRHHPCIA LHGMPYWSFT RGGEPVTIRA QGSFSANSVE AVRTASKQGL GLAMLTYWDI QQEIREGSLR QIDFEDALPE QLSITAVLPT RQRVPHRVRL FVDRLEAELQ KHNAGSTGTA SSTNEPA
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