Gene PSPTO_3050 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3050 
Symbol 
ID1184707 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp3431400 
End bp3432371 
Gene Length972 bp 
Protein Length323 aa 
Translation table11 
GC content57% 
IMG OID637394410 
Producttranscriptional regulator, AraC family 
Protein accessionNP_792844 
Protein GI28870225 
COG category[K] Transcription 
COG ID[COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.239612 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCCGAA CCGCCTTGCT TGATACCCAG CGTGCCAGTA CCGATGACCT TCCCGTGGAT 
CAGCGCGTAG CCTTTTGGGA GCAGTACAAC GCATCGACAC TGGTCGGTCT GAAGTGCTCT
TCCTTCAGCG AAACCGGCTT CAGCGCTCGG GAGGACAATC TGCGTCTGGA CCGGCTGCGG
GTCGCCCATA TTGCCGGTAC CCAACACGTC ATCGAGCGTG ATGGTTCAAT GATTCGCAGC
GCGCCCAAAG AGTCGGTGTT CGTCTCGCTG GTCATGGGCA GTGCGTCGTT TTTCTTTCAG
AACGGCAACT GCCATCTGCT GGAACCGGGC GAAATGATGG TTTATCGAAC CGACAAGCCC
TACCTGTTCG GCTTCTCCGC TTCGATGCAC AAGTTTATCT TCGATATCCC TCCGGACGTG
TTCGCCTCCC GCTGTCTGCG CCGCTTTGAT AATGCAGTGA AGATCAGCGC ACATACCGGC
ACACAGCGTT TACTGTTAAG AACATTGAGT GAGCGCACCG ATGGTTTTTT CGAGCAGCCG
CTCAGCCAAG GGGCAGACAG CTATCAAGAG GATGCCCTTG AACTGTTGGG GACTATCATT
GCCGGGCAGA TGGGCAATCG CCGGATCAAC GCACTCAGTG CGTCATACTT GCTGGCCGCC
AAGCAATGCA TCCTCGAGCA ACTTTCCGAC CCTGCATTGA GTTGTGAGCG GGTGGCTCAT
CAAACCGGCG TCTCCACACG ACACCTGACC CGGCTATTTG CGTTGGAAGA CACACAACCC
CATCGCTTCA TTTTGGAAAA GCGCTTACAG GGAGCATTCC GTCTGTTGAG CCAGGCGGAC
AGTCGCGTTC TGGACATTGC CGAAGTTGCC TATCGTCAAG GGTTCACCAG CCAGGCGCAT
TTCGCCAGGG CTTTCAAGGC GTACTATGGG CGCACGCCCA GCGACGTGCG CTCATCGTCG
GTCGGCGTAT AG
 
Protein sequence
MTRTALLDTQ RASTDDLPVD QRVAFWEQYN ASTLVGLKCS SFSETGFSAR EDNLRLDRLR 
VAHIAGTQHV IERDGSMIRS APKESVFVSL VMGSASFFFQ NGNCHLLEPG EMMVYRTDKP
YLFGFSASMH KFIFDIPPDV FASRCLRRFD NAVKISAHTG TQRLLLRTLS ERTDGFFEQP
LSQGADSYQE DALELLGTII AGQMGNRRIN ALSASYLLAA KQCILEQLSD PALSCERVAH
QTGVSTRHLT RLFALEDTQP HRFILEKRLQ GAFRLLSQAD SRVLDIAEVA YRQGFTSQAH
FARAFKAYYG RTPSDVRSSS VGV