Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3050 |
Symbol | |
ID | 1184707 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 3431400 |
End bp | 3432371 |
Gene Length | 972 bp |
Protein Length | 323 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637394410 |
Product | transcriptional regulator, AraC family |
Protein accession | NP_792844 |
Protein GI | 28870225 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.239612 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCCGAA CCGCCTTGCT TGATACCCAG CGTGCCAGTA CCGATGACCT TCCCGTGGAT CAGCGCGTAG CCTTTTGGGA GCAGTACAAC GCATCGACAC TGGTCGGTCT GAAGTGCTCT TCCTTCAGCG AAACCGGCTT CAGCGCTCGG GAGGACAATC TGCGTCTGGA CCGGCTGCGG GTCGCCCATA TTGCCGGTAC CCAACACGTC ATCGAGCGTG ATGGTTCAAT GATTCGCAGC GCGCCCAAAG AGTCGGTGTT CGTCTCGCTG GTCATGGGCA GTGCGTCGTT TTTCTTTCAG AACGGCAACT GCCATCTGCT GGAACCGGGC GAAATGATGG TTTATCGAAC CGACAAGCCC TACCTGTTCG GCTTCTCCGC TTCGATGCAC AAGTTTATCT TCGATATCCC TCCGGACGTG TTCGCCTCCC GCTGTCTGCG CCGCTTTGAT AATGCAGTGA AGATCAGCGC ACATACCGGC ACACAGCGTT TACTGTTAAG AACATTGAGT GAGCGCACCG ATGGTTTTTT CGAGCAGCCG CTCAGCCAAG GGGCAGACAG CTATCAAGAG GATGCCCTTG AACTGTTGGG GACTATCATT GCCGGGCAGA TGGGCAATCG CCGGATCAAC GCACTCAGTG CGTCATACTT GCTGGCCGCC AAGCAATGCA TCCTCGAGCA ACTTTCCGAC CCTGCATTGA GTTGTGAGCG GGTGGCTCAT CAAACCGGCG TCTCCACACG ACACCTGACC CGGCTATTTG CGTTGGAAGA CACACAACCC CATCGCTTCA TTTTGGAAAA GCGCTTACAG GGAGCATTCC GTCTGTTGAG CCAGGCGGAC AGTCGCGTTC TGGACATTGC CGAAGTTGCC TATCGTCAAG GGTTCACCAG CCAGGCGCAT TTCGCCAGGG CTTTCAAGGC GTACTATGGG CGCACGCCCA GCGACGTGCG CTCATCGTCG GTCGGCGTAT AG
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Protein sequence | MTRTALLDTQ RASTDDLPVD QRVAFWEQYN ASTLVGLKCS SFSETGFSAR EDNLRLDRLR VAHIAGTQHV IERDGSMIRS APKESVFVSL VMGSASFFFQ NGNCHLLEPG EMMVYRTDKP YLFGFSASMH KFIFDIPPDV FASRCLRRFD NAVKISAHTG TQRLLLRTLS ERTDGFFEQP LSQGADSYQE DALELLGTII AGQMGNRRIN ALSASYLLAA KQCILEQLSD PALSCERVAH QTGVSTRHLT RLFALEDTQP HRFILEKRLQ GAFRLLSQAD SRVLDIAEVA YRQGFTSQAH FARAFKAYYG RTPSDVRSSS VGV
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