Gene PSPTO_2966 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_2966 
Symbol 
ID1184620 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand- 
Start bp3335609 
End bp3336574 
Gene Length966 bp 
Protein Length321 aa 
Translation table11 
GC content59% 
IMG OID637394326 
Productsite-specific recombinase, phage integrase family 
Protein accessionNP_792763 
Protein GI28870144 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.121059 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGCAAG ACCCGCACAC CGACCAGACT GCACGCGTCA TCAGCCAGCC TTCGTTGCCG 
GACGTCAACA AGCCGTTGCG GCTATACCTC GACCGTCTTG CCCCTTCAAG CCGCCTGACC 
ATGACCTACG TGCTACAGGA TGCGGCTGAC CGGCTGGGCA TGGCTGACGT GGATATTCAT 
GACATCCCCT GGCACACATT GCAGCCCGGC CATGTCACTG CGCTGGTGGC CACGCTGCGC 
GAAGATGATT ACGCACCCAA CACCACTTCG TTGTACGTGA ATGCCATTCG CGGCGTGATG 
AACGAAGCCT GGCGGCACGA CCTGATCAGC CACGATCAAT TGTTGAAGAT CCGCTCGATC 
AAACCGGTCA GCGGCACGCG ACTGGCCAAG GGCCGCAACA TCCGCCGCAC GCTGATTCGT 
GAACTGATGG AAGCCTGTGC AGCAGACCCC AGGCCGCAAG GGCGGCGTGA TGCCGCAATC 
ATCGCCATCC TGTACGGGTC GGGAATGCGC AAATCCGAGT CGGTCAATCT GGACCTGGCC 
CAGATTGATT TTGCCGAACG CAGCCTGCGG GTCATGGGCA AGGGCAACAA GCAGTTGATC 
AAATACGCAC CCGAATGGGC GTTCAAGGCG TTGAACGACT GGCTGGAACT GCGCCGTTCG 
TGCCTCCAGC CGGGGCAGGG CGATGACCTG TTTCTGTTCA ACCGTATTCG ACGCGGCAGC 
CACATCACCC GCGACAGAAT TACCAAACAC GCCATTTACT TCATCGCCAA GCAGCGCGGG 
CGGCAGGTTG GCGTGGACAT CATGCCGCAC GATTTCCGCC GTTCGTTTAT CACCCGGGTA 
ATCGAAGAGT TCGATTTGTC GATTGCCCAG AAACTGGCCC ATCACACGCA TATCTCGACC 
ACCGCCAGCT ACGACATGCG CAGTGAGAAC GAGCGCCGTA ATGTGGTGGA CGGCTTCGAT 
CTTTAA
 
Protein sequence
MPQDPHTDQT ARVISQPSLP DVNKPLRLYL DRLAPSSRLT MTYVLQDAAD RLGMADVDIH 
DIPWHTLQPG HVTALVATLR EDDYAPNTTS LYVNAIRGVM NEAWRHDLIS HDQLLKIRSI 
KPVSGTRLAK GRNIRRTLIR ELMEACAADP RPQGRRDAAI IAILYGSGMR KSESVNLDLA 
QIDFAERSLR VMGKGNKQLI KYAPEWAFKA LNDWLELRRS CLQPGQGDDL FLFNRIRRGS 
HITRDRITKH AIYFIAKQRG RQVGVDIMPH DFRRSFITRV IEEFDLSIAQ KLAHHTHIST 
TASYDMRSEN ERRNVVDGFD L