| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2960 |
|---|
| Symbol | |
|---|
| ID | 1184614 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 3327729 |
|---|
| End bp | 3329852 |
|---|
| Gene Length | 2124 bp |
|---|
| Protein Length | 707 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637394320 |
|---|
| Product | pyridoxal-phosphate dependent enzyme family/ornithine cyclodeaminase family protein |
|---|
| Protein accession | NP_792757 |
|---|
| Protein GI | 28870138 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0031] Cysteine synthase
[COG2423] Predicted ornithine cyclodeaminase, mu-crystallin homolog |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.76325 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAACCTTA TGCACAAAGC TCTTGGGTAT CAAAGCCTTG GCGACATTGT TCACGACCAG
ACCTTCCTCG AGGTCACGGG TGTGGGTCCC GATTTTTTCC TGAAAATGGA GTCACTCAAC
CCCGCGGGCT CGATCAAGCT CAAGACCGCC GTCGGCCTGG TCAATGACGT GCAGGCCCGG
GGCCTGCTTG GGCCACAGAC GACGCTGATC GAGTCTTCAT CCGGCAACCT GGGTGTGGCG
CTGGCGATGA TCTGCGCCGA GCGCGGGATT CCCTTTACCT GCGTGGTCGA TCCGAACAGT
TCCAGCCACA ACATCCGCAT GATGCGCAGT TATGGCGCGC AGGTCATCCA GGTCGAGATT
CCGGATGCCA ACGGCGGGTT TCTCGGCACA CGCATCGCGC TGATTCGCGA GAAAGTGGCC
AGCGATCCGC GTTACGTCTG GCTCAATCAA TACGAGAACG CGGCCAACCC GAGAGCCCAT
GCGCGGACCA CGGCGCACTC GATCAGTCGG CATTTCGGCC ATGTCGATTA TCTCTTCGTA
GGGGCCGGAA CCACTGGCAC GCTGATGGGC TGCCTGCAGC ATTTTCAGCG ACACCATCCG
ACCACCAAAA TCATCGCCGT CGACAGCGTG GGCTCGGTGA CCTTTGGCAC CCCGGCCAGC
CGTCGTTTCA TACCGGGTCT GGGCACCAGT CAGCGGCCGC CGATCTTCAA TGGCGATGGT
ATTCACGCAC TGGAAATGGT CCCGGAAGCA AACGCTGTTG CCATGTGCCG CATTCTGGCG
CGCAGCAAAG GCATGCTGGT CGGCGGCTCG ACGGCAACGG TGATCGCAGC TGTGCACGCC
TGGCGCGAGC GGATAGAGCC GGGCTCGGTG GTGGTTGCGC TGTCGCCTGA CTGGGGCGAG
CGCTACCTAG ACACGCTGTA CGACGACCAA TGGGTCGAGC AGCGCTTCGG CCGTGAAGTG
CTGAGCATGA CCCTGACAGA CCTCTCGAAC AGTAAAAATA CACCTCTTTG TGGGCGCGAG
ATTGCTCGCG AAAGCGGTGG TTCATTGGTG ACGCCTTCGC GAGCAAGCTC GCGCCCACAG
GGTGTGTGTT CAACTTGTGA GGTGGCGGCC GGGCGCCTAG CGCAGGCGGC TTTTCATGTG
GTTGACGGGG AAGTGACGGC GCGGCTGCTG GCGGCTGATC CGCTGGCTTG TATCGACGAC
GTGCAGGCCG CGTATCTGGC CCATGAGGCC GGGCGCACGG TCAACCCCGA CAGCTATTTT
CTGCGCTTTC CCGAGGTGCC GGCCAATCGC ATCATTGCCT TGCCCGCCAG CCTGTCGGGT
GATCAGCCTG TCAGCGGCAT CAAGTGGATC TCCAGCTTTC CGGGCAATGT CGACACCGGC
CTGCAACGTG CATCGGCGGT GCTGATCCTC AATGACCCTG TGACCGGCTA TGCGTTTGCC
TGCCTGGAAG CCTCGCGGAT CAGCGCCATG CGCACCGCAG CCTCGGCGGT ACTTGGTGCA
CGCTGGATGA ATCGTCAGCA GCGCTACGTC AGGCGAATGG CGTTTATCGG TGCCGGTTTC
ATCGCCAGAA CCATTCTCGA CATGTTTGTC AGCGATGGCT GGGCGATGGA CTCGGTAAGC
GTCTTCGATC AGCACGAGGA TTCAGCGCTG GCCTTGATCA GCCACGCTGC CGGTCGGCAT
CGGTTGAACG GCGAGCAAAC GGACCTGCAC GCCTGCCTGC AGGCCGATGT GGTGGTATTC
GCCACCACCG CGCCGCGCCC TTACGTTCTG GAACCGGTGT TTCGCCCAGG GCAAGTGGTG
CTGAATATCT CACTGCGTGA TCTGGGGCCG GAGGTTATCG CTCAGGCCGA CAACATCCTT
GATGACGTCG AGCATTGCCT CAAGGCTCAG ACGTCGCCTG ACCTTGCGGT GCGCCACTAT
CAGCACCGTT CGTTCATTAC CGGCACGCTG GCGCAACTGA TGACCGGCCA GGTGGAATTG
AGCCCGGATC GCGCATCGAT CTTCTCGCCA TTCGGCCTTG GCGTGCTCGA CCTTGCCGTG
GGCCAGCGTG TGTATCGCCA GGCGCTTGCA GAGGGCAGCG CGCTGCCGGT GCCGCGATTC
TTCTTTGAGT CGAACCGCTG GTGA
|
|---|
| Protein sequence | MNLMHKALGY QSLGDIVHDQ TFLEVTGVGP DFFLKMESLN PAGSIKLKTA VGLVNDVQAR
GLLGPQTTLI ESSSGNLGVA LAMICAERGI PFTCVVDPNS SSHNIRMMRS YGAQVIQVEI
PDANGGFLGT RIALIREKVA SDPRYVWLNQ YENAANPRAH ARTTAHSISR HFGHVDYLFV
GAGTTGTLMG CLQHFQRHHP TTKIIAVDSV GSVTFGTPAS RRFIPGLGTS QRPPIFNGDG
IHALEMVPEA NAVAMCRILA RSKGMLVGGS TATVIAAVHA WRERIEPGSV VVALSPDWGE
RYLDTLYDDQ WVEQRFGREV LSMTLTDLSN SKNTPLCGRE IARESGGSLV TPSRASSRPQ
GVCSTCEVAA GRLAQAAFHV VDGEVTARLL AADPLACIDD VQAAYLAHEA GRTVNPDSYF
LRFPEVPANR IIALPASLSG DQPVSGIKWI SSFPGNVDTG LQRASAVLIL NDPVTGYAFA
CLEASRISAM RTAASAVLGA RWMNRQQRYV RRMAFIGAGF IARTILDMFV SDGWAMDSVS
VFDQHEDSAL ALISHAAGRH RLNGEQTDLH ACLQADVVVF ATTAPRPYVL EPVFRPGQVV
LNISLRDLGP EVIAQADNIL DDVEHCLKAQ TSPDLAVRHY QHRSFITGTL AQLMTGQVEL
SPDRASIFSP FGLGVLDLAV GQRVYRQALA EGSALPVPRF FFESNRW
|
|---|
| |