Gene PSPTO_2954 details

Gene Information

• Locus tag: PSPTO_2954
• ID: 1184608
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 3321297
• End bp: 3321902
• Gene Length: 606 bp
• Protein Length: 201 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 637394314
• Product: ThiJ/PfpI family protein
• Protein accession: NP_792751
• Protein GI: 28870132
• COG category: [K] Transcription
• COG ID: [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0165103
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCCACTCA ATATCGGTAT TTACGTTTAT GACGATGTCG AGGTTCTCGA CTTCGCTGGC 
CCCTATGAAG TGTTCACCAC GGCGACACGC ATGCATGCCC GCAAAAGCCG TGACGACCGC 
CAACTGTTCA ACGTGTTTAC CATTGGCCGC AGCATGGCCC CGGTACGTGC GCGTGCCGGG 
CTCAAGGTCG ATCCGGACTT CTCTATCACC GACCATCCGC CTGTGGATTG CCTGATCATT 
CCAGGCGGCG TAGTGACGGC CGAACTGGAA AAAGCCGACG TGATTGGCTG GATCAGCGAT 
CAGTCACAGC CTGGTCGCGT TGTAGCCGCC GTGTGCACCG GGGCGTTCAT GCTGGTCAAG 
ACCGGCAAGC TGGCAGGCAA GCAGGTCACC ACGCACTGGG AAGACATCAA CGATCTCAAG 
GAGATGTTCC CCTCGGTGGA CGTGCTCAGC ACCCTGCGCT GGGTCGATGA AGGCTCGTTC 
GTGACCTCGG CGGGCATTTC TGCCGGCATC GACATGAGCC TTCATCTGGT CGAGCGCCTG 
CACAGCCGTG AACTGGCCGA ACGTACTGCT TTGCAACTGG ATTTCGACTG GACCGAGAAC 
GACTGA 

 

Protein sequence

MPLNIGIYVY DDVEVLDFAG PYEVFTTATR MHARKSRDDR QLFNVFTIGR SMAPVRARAG 
LKVDPDFSIT DHPPVDCLII PGGVVTAELE KADVIGWISD QSQPGRVVAA VCTGAFMLVK 
TGKLAGKQVT THWEDINDLK EMFPSVDVLS TLRWVDEGSF VTSAGISAGI DMSLHLVERL 
HSRELAERTA LQLDFDWTEN D