Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2946 |
Symbol | |
ID | 1184600 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 3309146 |
End bp | 3310468 |
Gene Length | 1323 bp |
Protein Length | 440 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637394307 |
Product | outer membrane porin, OprD family |
Protein accession | NP_792744 |
Protein GI | 28870125 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.153867 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTGTGT CAGCTTCCTT CGCCCGTAAA AAAGTTCTTA CAAATAATGC GCTTGGAAAA AACTACAGCC TCGCCCTTGG TCTGCTGGGC ATCAGCGTGC TGCCGGACGC TGCGCAGGCT CAGGGTTTTG TGGATGACAG TCACGGCACC CTGACGCTGC GCAATTACTA CATGGATCGT GATTACAAGG ACGACGGCGC CAGGACTGCG ATTCGGGAGT GGGCGCAGGG CTTCATCATG AACGCGGAGT CGGGTTTTAC CGAAGGGCCG GTGGGCTTGG GCATTGATGC ACGGGCACTG GTCGGCATGA AGCTGGATTC CTCGCCGGAT CGCAGCGGCA CCGAGCTGTT GCCTGTTTCA GCCGGCGACG GGCGCGCTGC CGACGAATAT TCACGGCTGG CATTGACCGG CAAACTGAAA TTTCGTGAAA CAACGGTCAA GACCGGCGAT GTGTCGATCT TTCTGCCATT TGCCTTCGCC AGCCCCTCGC GTCTGCTGCC GCAGACCTTT CGGGGTACCA CGCTGACCTC GAAAGAGATC GACGGATTGA CCCTCAATGC CGGCTACATC GACCGGGTCA ACAAGCGTGA CTCAACCAAT TATCAGGCGA TCAGCATCGC GTCGCCGAAC CGGCGTTTCA ACGCAGCGGC CACCTCATCG CACATGACCT ACGCCGGGGG CGACTATCAG GTCAGTAAAG CCCTGAGCGT GCGCGTCTAT CACGCTGAAG TGGCTGACCT CTACACCCAG AACACCCTGG CGCTGCTGCA TAAGCTGGAC GTGGGCGACG GTGTAATGAC CACTGATCTG CGCAGTTTCT TCAGCCGTGA CACCGGCAGC GCAAAAGCCG GTGAGGTGGA CAATCAGAAC CTGTCGGCGT TGCTGGGCTA CAAATGGGGA GGGCACAGCG TGAGCCTTGG TTACATGCAT GCCAGCGGCG CTACGGCGAC ACCTTATGTG TCGGGCACCG AGTTGATGGG CTTGAGCGAG ATGACCATGA GCTCCGACTT TCTCAATGCC AGGGAGCGTA CCTGGCAAGC CATCTACGAC TACGATTTTA CGGCGGTTGG CGTTGTCGGC TTGCGCAGCC GCCTGCGATA CATACGCGGC GACAATATCG AACTGTCGGC CTTCAACGCA GATGATCGCA AGGAGCGGGA GTTTCAGATG GAGTTGGGCT ATGTGGTGCA GAGCGGTCCA TTGAAAAATG TCGGCCTGTT GGCGCGCAAG TCGATTTACC GAAATGACTT CCCGACAGGT GCAGCGTTTC GCGATGAAAA CCAGACGCGC TTCATTGTGC AGTACAGCGT GCCCATCTGG TAA
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Protein sequence | MAVSASFARK KVLTNNALGK NYSLALGLLG ISVLPDAAQA QGFVDDSHGT LTLRNYYMDR DYKDDGARTA IREWAQGFIM NAESGFTEGP VGLGIDARAL VGMKLDSSPD RSGTELLPVS AGDGRAADEY SRLALTGKLK FRETTVKTGD VSIFLPFAFA SPSRLLPQTF RGTTLTSKEI DGLTLNAGYI DRVNKRDSTN YQAISIASPN RRFNAAATSS HMTYAGGDYQ VSKALSVRVY HAEVADLYTQ NTLALLHKLD VGDGVMTTDL RSFFSRDTGS AKAGEVDNQN LSALLGYKWG GHSVSLGYMH ASGATATPYV SGTELMGLSE MTMSSDFLNA RERTWQAIYD YDFTAVGVVG LRSRLRYIRG DNIELSAFNA DDRKEREFQM ELGYVVQSGP LKNVGLLARK SIYRNDFPTG AAFRDENQTR FIVQYSVPIW
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