Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2927 |
Symbol | oprE |
ID | 1184581 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 3290338 |
End bp | 3291669 |
Gene Length | 1332 bp |
Protein Length | 443 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637394288 |
Product | outer membrane porin OprE |
Protein accession | NP_792725 |
Protein GI | 28870106 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0534215 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAGCGTA TCAATCGCGC CACCCCTTTC GTTGCGGGCT TTTGTGGCCT GCTGATCGCG CAGCAGAGCT ACGGCGAAGG TTTTCTGGAA GACAGCAAGG CCAGCATTCT GGCGCGCAAC TTCTTCAGCA ACGCCGACAA CCGTAGCGGT GCTGCTGCCC CTAACTACAC GCAGGAGTGG GGCCAGGGCT TCATGCTCAA TTACCAGTCC GGCTACACGC CCGGCTCGGT AGGCTTGGGC GTTGATGCAC TGGGCCAGTT GGGCGTTCGT CTGGACTCGG GTAAAGGACG CCACTACAAC CCGCAAAGTA CCGCGTTCAA CGGCAACATC TTCCCGACGG ACAGCGACGG CCGCGCGGTT GATGAGTTCA GCAGCCTGGG CGCGACGCTC AAGGCGCGCG TCTCGCAGAC CGAGTTGAAG TACGGCACGC TGGTGCCGAT GCTGCCGGTG GTAATGTCCA CCGACCGTAT GCTGCAGCAG ACCTTTCGTG GCGGTCAGGT TCAGTCCAAA GACCTGAAAG ACTTCACCTT CATCGCAGGC CAGCTGGAAC ACGTCATGGG CCGGGGTTCG ACCAACCAGA TGGGCATGTC GATCCCCGGC GCCAACAACC CGTTGACCGG CGAATTCGTC AACAAGTTCT ACTACGCAGG CGTCGATTAC AAACCCGTCA AGGACCTAAC CCTGCAGTAT TACTACGGCA ACCTGGAAAA CTTCTACAAA CAGAACTTTC TCGGTCTGAA ATACGACCTG CAACTTGGCC CTGGTACTTT GCGCACCGAC CTGCGCCACT TCGACAACCG CTCGGACGGC GCGAATGGCC ACGATCCTTC GTTTTACACG GTGGGTTATT ACGGCAACGG CGTCACCAAG GGTGAAGTCG ACAGCCGTCT GTCCAGCGCT CAGTTCACTT ACCTCATCGA CGGCCATACC TTTGCTGCGG GTTATCAGGC AGTCACCGGC GACAGCGACG CGGTCTGGCT GAATCAGGGC GATGGATCAA CCGCTTACTT CATGACCGAA TCTATGATCG GCAAATTCCA GCGCGCCGGG GAACGCACCT GGCAAGTCCG TTATGGCTAT GACTTCGCCA GACTCGGCGT ACCCGGCCTG AACTTCTTGG CCATGTACGA AAGCGGCTCG AACATCCAGA CCTCCGACGG CGACAAGAAG GAATGGGAAC GCAACGTGAC CCTGAGCTAC GTTTTGCAAT CGGGCCCGGC GAAAAACCTC AGCATCGCAC TGCGTCACGC ACAACTTCGC ACCGAGTTCG CCAGCCAGCG TGATGCCGAT GAGCACCGGA TCATTGTCAG CTATCCGATC AATATTTTTT GA
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Protein sequence | MERINRATPF VAGFCGLLIA QQSYGEGFLE DSKASILARN FFSNADNRSG AAAPNYTQEW GQGFMLNYQS GYTPGSVGLG VDALGQLGVR LDSGKGRHYN PQSTAFNGNI FPTDSDGRAV DEFSSLGATL KARVSQTELK YGTLVPMLPV VMSTDRMLQQ TFRGGQVQSK DLKDFTFIAG QLEHVMGRGS TNQMGMSIPG ANNPLTGEFV NKFYYAGVDY KPVKDLTLQY YYGNLENFYK QNFLGLKYDL QLGPGTLRTD LRHFDNRSDG ANGHDPSFYT VGYYGNGVTK GEVDSRLSSA QFTYLIDGHT FAAGYQAVTG DSDAVWLNQG DGSTAYFMTE SMIGKFQRAG ERTWQVRYGY DFARLGVPGL NFLAMYESGS NIQTSDGDKK EWERNVTLSY VLQSGPAKNL SIALRHAQLR TEFASQRDAD EHRIIVSYPI NIF
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