Gene PSPTO_2906 details

Gene Information

• Locus tag: PSPTO_2906
• Symbol: vanR
• ID: 1184560
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 3269797
• End bp: 3270507
• Gene Length: 711 bp
• Protein Length: 236 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 637394267
• Product: transcriptional regulator VanR
• Protein accession: NP_792704
• Protein GI: 28870085
• COG category: [K] Transcription
• COG ID: [COG1802] Transcriptional regulators

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.118956
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCAAAC CCGGTCAAAC CATTCTCGTT GCGCTGCGCA AGATGATCGC ATCAGGCGAG 
CTGGCGGCTG GCGAGCGCTT GATGGAAGTG CCGACCGCCG AGTTGTTCGG TGTGTCACGC 
ATGCCGGTGC GCATGGCGTT TCGCACGCTG GAACAGGAAG GCCTGCTGGT GCCGTTCGGC 
GGGCGCGGTT TTCAGGTGCG CTCGATCAGC CCGCAGGAGA TCGCCGGGGC GGTCGACGTG 
CGTGGCGTTC TGGAAGGGCT TGCGGCGCGG CAGATGGCCG AGCGCGGGTT GACGCAGGAC 
GCGCGCGACG CGCTTGAGGC TTGCCTGGTG CAGGGCGATG CTCTGTTCGA CAAGGGCTAT 
GTCACCGAAG ATGACCTTGA GGTCTATCAC GACATGAACA TGCGTCTGCA TCAGGTGATC 
GTGGCGGGCA GCGGTAATCG GGCAATTGCC GATGCACTGG CGCGCAACGA CCACCTGCCG 
TTTGCGTCAG TCACGGCGCT GGCGGTGGAT CGCCACAATC TGATTCGAGA GTATCGACGC 
TTCAACTTCG CGCACATGCA GCACCATGCG GTGGTGGATG CGTTGATCAA CGGGCAGGGT 
GCCCGCGCCG AGGCACTCAT GCGCGAGCAC GCCAATGCGA CCCTGCGTTA CGCCGACATT 
TTCGGCGCTG GCGTGCACGA GCGCATGAAA GTCATTCAGC GCCCGGACTG A 

 

Protein sequence

MSKPGQTILV ALRKMIASGE LAAGERLMEV PTAELFGVSR MPVRMAFRTL EQEGLLVPFG 
GRGFQVRSIS PQEIAGAVDV RGVLEGLAAR QMAERGLTQD ARDALEACLV QGDALFDKGY 
VTEDDLEVYH DMNMRLHQVI VAGSGNRAIA DALARNDHLP FASVTALAVD RHNLIREYRR 
FNFAHMQHHA VVDALINGQG ARAEALMREH ANATLRYADI FGAGVHERMK VIQRPD