| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2809 |
|---|
| Symbol | |
|---|
| ID | 1184463 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 3133704 |
|---|
| End bp | 3135164 |
|---|
| Gene Length | 1461 bp |
|---|
| Protein Length | 486 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637394177 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_792614 |
|---|
| Protein GI | 28869995 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2072] Predicted flavoprotein involved in K+ transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.133615 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGATG TAAACGCACC TGCCGGTCTC GCGGCGCTGG AAGCTCGCCT GCAGCAGGAT
CTGGCGTGGC TGGATCTGCC CGCCAAGCCT TGGGTCAAGC CGAGGACGAA CGCCGGGCAG
GCTGTGCTTG ATGTAGCAAT CATTGGCGGC GGCATGGCAG GGCTTGCGCT GGCGGCAGAG
CTGCGACATC TGGGCGTGGC GGCGGTGATT TTCGATCAGT CGCCAGCCGG TTTTGAAGGC
CCGTGGGCGA CCACGGCGCG GATGGAGACT CTGCGTTCGC CGAAACAGTT GACCGGCCCG
GCGCTCGGTT TGCCGGCCCT GACCTTTCGC GCCTGGTACG AAGCGCAATT CGGTGCCGAC
GGCTGGGCAG CGCTGGATAA AATCCCGCGC CTGCAATGGG CCGAGTACCT GCGCTGGTAT
CGCAAGGCGC TGGCGCTGGA TGTGCGCAAC GAACACCGCG TAAGCCGCGT CGCGCCGCGA
ACGGACGGCC TGGTCGAACT GGACATCATG ACGCCTGGGC AAACCCGCTT CATGCTGGCG
CGCCATGTGG TGCTGGCGAC GGGTCGTGAT GGTCTGGGCG GCCCCTGGGT GCCGGATTTT
GCCCGGCAAC TGCCAGATCA TCTGTGGACA CACTCGGCCG CCGGTTTGCA GGATGACTGG
TTCGAAGGCA GGCGCGTCGC GGTGATCGGC GGCGGTGCCT CGGCGATGGA CAGCGCTGCC
ACCGCGCTGG AAGCAGGTGC ACAGCGGGTA GATCTGTTGA TTCGCCGCGC CGAGCTGCCA
CGGGTCAACA AAGGCAAGGG CGTCGGCAAT CCGGGCATGG TCCACGGCTA CTGGCGCCTG
CCGGATATCT GGAAATGGCG CATCCGTCAC TACCTGAATA GGCAGCAGGT GCCACCCCCA
CGCGGCAGCA CGCTCAGGGT GTCCCGTTCG GGCCGGGCGC GCTTTCTGCT CGACAATCCA
GTACTCGCGG TCGAAGCAAA CCCGGCGGGC GGGGTCTGGC TGCAAACATC AAAAGCGCGC
GTCGAGGCGG ATTTTGTGGT GTTCGCCACC GGTTTTCGGA CCGACTTCGA GCTGCGCCCG
GAATTTGCGC CGTTCTCGTC GCATATTCGT GTCTGGCAGG ACCGCTTTGA GGCGCCGGAA
GGCGAAGCTG ATAGCGAACT GGCCGTATTG CCAGACCTGG GCAATTGTTT CGAGTTTCAG
GAAAAGACCC CCGGCGCCTG TCCGGGCCTG AACCACATCC ACTGTTTCAG CTACCCGGCG
GCGCTGAGCT ATGGTGCGGT GTCGGGGGAT ATTCCCGCCA TCAGCGAAGG CTCCAAACGC
CTGGCCCACG CGCTGATCGG GCTGCTGTTC AACGAGGACA TCGCGCTGCA TTTTGAATCG
ATGCGCAGCT ATGCCGAGCC AGAACTGCTG GGCGATGAGT GGGTTGCGAG CGAGCCTGGC
ACCGAAGAGT TGCGCCCATG A
|
|---|
| Protein sequence | MSDVNAPAGL AALEARLQQD LAWLDLPAKP WVKPRTNAGQ AVLDVAIIGG GMAGLALAAE
LRHLGVAAVI FDQSPAGFEG PWATTARMET LRSPKQLTGP ALGLPALTFR AWYEAQFGAD
GWAALDKIPR LQWAEYLRWY RKALALDVRN EHRVSRVAPR TDGLVELDIM TPGQTRFMLA
RHVVLATGRD GLGGPWVPDF ARQLPDHLWT HSAAGLQDDW FEGRRVAVIG GGASAMDSAA
TALEAGAQRV DLLIRRAELP RVNKGKGVGN PGMVHGYWRL PDIWKWRIRH YLNRQQVPPP
RGSTLRVSRS GRARFLLDNP VLAVEANPAG GVWLQTSKAR VEADFVVFAT GFRTDFELRP
EFAPFSSHIR VWQDRFEAPE GEADSELAVL PDLGNCFEFQ EKTPGACPGL NHIHCFSYPA
ALSYGAVSGD IPAISEGSKR LAHALIGLLF NEDIALHFES MRSYAEPELL GDEWVASEPG
TEELRP
|
|---|
| |