Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2652 |
Symbol | |
ID | 1184304 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 2943711 |
End bp | 2946692 |
Gene Length | 2982 bp |
Protein Length | 993 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637394021 |
Product | bacteriophytochrome, putative |
Protein accession | NP_792460 |
Protein GI | 28869841 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3920] Signal transduction histidine kinase [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.163581 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCGAGC ACACACTGGA CGCGAATCCC GATGCAGCGC TTGAAGCAGC GCTTGCTGAA TGTGCACGTG AGCCGATCCG GATCCCTGGC GCGATTCAGC CTCATGGCGT CTTGCTCAGC GTCGCAGGTG ATCCGCTTTG CATTGAACAG GTCAGCGCCA ATTGCGCGAA GAGTCTTGGC CTGGAAAGCG CCGAGCTGCT GGGCCAACCC CTGTCGATCC TGCTGTCAGC GGCACATTCA ATGCTCATCA ATCAGGCGTA CAGCCAGCCT GCGATGCCCA ACAGCGATCC GATACGACTG ACGGTGAGGG CCGTGGATTA CAATGCGTCG CTGAGCCGTG CCGGGGATGT ACTGATCATC GAGCTGGAGC CCTTTGTCGA AGCCGCTCAC GAACAGTCCA GAATCATCAC CCGTGTGTTG CGCAATCTGC AGGCCGCCAC AACCCTGGAG ACGCTGTTCG ATATCGGCGT GCACGAGATT CAGGCGCTCA CCGGTTACGA CCGGGTCATG ATTTACCGGT TCGAGCCCGA GGGTCATGGC AAGGTCGTTG CCCAGGCACT TACCGGCCCC CTGCCCAGCT ACAGCGGCCT GAACTTCCCG GGCTCCGACA TTCCCGCCCA GGCGCGAGAA CTGTATCGCC TGAACTGGAT TCGGCTCATT CCCGATGCCA CCTACGTTCC TGTGGCCTTG ATACCGACGT TGCGACCCGC GACCGGGCAA CCGCTGGACT TGAGCCTCTC GACACTGCGC AGCGTGTCTC CTGTTCACTG CGAGTACCTG AAAAACATGG GCGTGCGCTC ATCCATGAGT ATCTCGCTAC TGGACGGCGG CGAGCTGTGG GGGCTGATTA CCTGCAGCCA TCCCGAGCCG CTGCTGGTGT CCAGAGAACT GCGCGATGCC TGCGCTATGA TCGGCCAACT GTTGTCAGTA AAGATTTCCG CAATCGTCGC CACTCATATT CAGCGCGAGC GCGAAGAAAA AGTCGTCCTG CTCGGGCAAC TGGCGGATGC CATGAACCGC GCCGACCATG AAATTCTCCA CGGTCTGGTA AGCCGTCCAC AGCTGCTTCA GGCCCTGACG CAGGCCGATG GCGCGGCCGT GCTGATTGAC GACCAGGTTC ATCTGTTCGG TCAATGCCCC ACATCCGAGG AGGTTCGAGC CCTTTACCAG TGGATTCGTG ACACCGGCCT CACCCGCCAA CGGTCCAAAG AGCGTGCCAC GGGCCTGCAA GGGCTGGGCG TGTTTCACAC TGACTCAATG CAAAGAGAAC GTCCCGAGAG CGCCGCCTAC CGCGAGACTG CCAGCGGGGT CATTGCCTTC ACGCTGCCCA AGCCGGTCGA CAATGCCGTC ATGTGGTTTC GCTCCCAGCT TGCCTCCACC ATGAACTGGA GCGGCAACCC GGCACATCAT GTCAGCACCC GCGCGGCAGG CTCGGCAAGC CATGGCCTGC GTCCACGGCA ATCGTTCGAT GTCTGGAAGC AGGAAGTCAC CGGCATCGCC CGCCCTTGGT CGCGGGCAGA TCTTTATGGC GCCGAAGACA TTCGCCGTTC AGCCCTGGAA AGTGACCTGG AACGCCAGGT GCAGCGCGAG CAGGAAGCGG TTCGCTTGCG TGACGAACTG GTTGCGGTGG TTTCCCACGA CCTGCGCAAC CCGATGTCTA TCATCATCAT GCAATGCGGC ATGATGCAAC GCTGGGCGGT CGACGACACG AACTTTGAAA ACCGCAACAT CCGTCGCGCC CTGGGCACCA TCGAGAAAGC CACAACGCGC ATGAACAGCC TGCTCGAGGA TCTGCTCGAC ACCGCGCAGA TCGAGGCTGG CCGTTATCAG TTGTCGCGCC TTGCATTGAG TGTCACCAGC CTGCTTGAAG AAGCCTGCAG CCTGCTGGTC ATGCTGACGA CCGAGAAGAA TATCGAGCTC AATTGCACCT CTGCGCAGGG CCTGGTGATC GACGCGGACC CGGAACGGAT CTTTCAGGTG CTGTCCAATC TGGTTGGCAA TGCCATCAAG TTCACCCCCA AAGGCGGTCG AATCAATATC GACGCAGTGG CCGATGGTGA CGACGTGCTG TTCAGGGTCA GTGATGACGG GATCGGCATT CCGGCGCAAC ACCTGCCCTA TATTTTTCAG CGGTATTGGT CAGTGAAAGA AGGCAACCCG CGTGGCAACG GCCTGGGGCT GTACATCTGC CAGGGCATTA TCACCGCTCA CGGCGGGCGT TTATGGGCCG ATAGCTCGCT TGATTCAGGC AGTGTGTTTT CCTTCACGCT GCCCATGCAC CAAGGGCAGG ACACGATTGG CGAGTCGACC TTCCTGAAAC AGAGCGGCAC CACACACCGC CTGGCGCAAT CGATTTCCAG CAAGCTGGAG CGTCAGCAAC TGGAAGATCG CCTGACCCGC GCGGGGTTGT TGAACGAGTT GAATCACCGG GTCAAAAATA CGCTGGCAAC CGTTCAGGCT ATCGCTTCTC TTACGGTAAA CAGCTCGACC TCACTCGATT CCTTTCGCAA AAGCTTCGAT GCACGCCTGT TTGCACTGAG TCAGGCGCGC GCAGAGTGGA TGTCCACCGA GCTGGCCGAT CTGCTGGCAC AGCTGCAAGA CGTGAACGGC GGGCAGCACC GGATTACCTT CACAGGAGAC CCGGTCAGAC TCGAACCGCG GATTTCCCTG ACGCTTTCAA TGGTGCTTCA CAAACTGATG GCCAATGCAT TGCAACATGG CGCGCTTTCC TCGCCTGCAG GTCAGGTGAC GGTGGCGTCC ACCTTGAACA GTCATCACAA CCCGCCCACG TTGAGTATCG ACTGGCTGGA AACAGAAGGC CCGCCGGTCG TTGCGAGCAA CGTAAAAGGC TTTGGCCTGC GTTTGATACG CCGCAGTATC GAGCGCGAAC TCAAAGGCAA GGTCGACATC AAGTTCGCCA GTACAGGTGT CAGTTGGTCA ATGCTGATCC CGTGGCCAGA AAAGCCGGAA AGCAGTCTAT GA
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Protein sequence | MIEHTLDANP DAALEAALAE CAREPIRIPG AIQPHGVLLS VAGDPLCIEQ VSANCAKSLG LESAELLGQP LSILLSAAHS MLINQAYSQP AMPNSDPIRL TVRAVDYNAS LSRAGDVLII ELEPFVEAAH EQSRIITRVL RNLQAATTLE TLFDIGVHEI QALTGYDRVM IYRFEPEGHG KVVAQALTGP LPSYSGLNFP GSDIPAQARE LYRLNWIRLI PDATYVPVAL IPTLRPATGQ PLDLSLSTLR SVSPVHCEYL KNMGVRSSMS ISLLDGGELW GLITCSHPEP LLVSRELRDA CAMIGQLLSV KISAIVATHI QREREEKVVL LGQLADAMNR ADHEILHGLV SRPQLLQALT QADGAAVLID DQVHLFGQCP TSEEVRALYQ WIRDTGLTRQ RSKERATGLQ GLGVFHTDSM QRERPESAAY RETASGVIAF TLPKPVDNAV MWFRSQLAST MNWSGNPAHH VSTRAAGSAS HGLRPRQSFD VWKQEVTGIA RPWSRADLYG AEDIRRSALE SDLERQVQRE QEAVRLRDEL VAVVSHDLRN PMSIIIMQCG MMQRWAVDDT NFENRNIRRA LGTIEKATTR MNSLLEDLLD TAQIEAGRYQ LSRLALSVTS LLEEACSLLV MLTTEKNIEL NCTSAQGLVI DADPERIFQV LSNLVGNAIK FTPKGGRINI DAVADGDDVL FRVSDDGIGI PAQHLPYIFQ RYWSVKEGNP RGNGLGLYIC QGIITAHGGR LWADSSLDSG SVFSFTLPMH QGQDTIGEST FLKQSGTTHR LAQSISSKLE RQQLEDRLTR AGLLNELNHR VKNTLATVQA IASLTVNSST SLDSFRKSFD ARLFALSQAR AEWMSTELAD LLAQLQDVNG GQHRITFTGD PVRLEPRISL TLSMVLHKLM ANALQHGALS SPAGQVTVAS TLNSHHNPPT LSIDWLETEG PPVVASNVKG FGLRLIRRSI ERELKGKVDI KFASTGVSWS MLIPWPEKPE SSL
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