| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2406 |
|---|
| Symbol | |
|---|
| ID | 1184058 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 2655936 |
|---|
| End bp | 2656382 |
|---|
| Gene Length | 447 bp |
|---|
| Protein Length | 148 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637393782 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_792221 |
|---|
| Protein GI | 28869602 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1959] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR00738] rrf2 family protein (putative transcriptional regulator) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.888596 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAACCA GTAGTCGTTT TGTGGTTGCC GTCCATACGC TGGCCGCTCT GGCCGTCAGC
GACGGAAGGC CGCTACGTTC CGAAGACCTT GCCTATTCGG CAAATACCGG CGCTGTGGTG
ATTCGTGGGC TGCTGTCCCG GCTGAGTACG GCGGGGCTGA CACGTTCGCA ACTGGGTGCT
GGTGGCGGTG CCTTGCTGGC CAGGCCTGCA GAGAAGATAC GCTTGCTGGA CGTTTACGAA
GCGGTCGAGG ATACCGAGCT GTTCTCGTCA CACCGGGTGG CGCCCTGCGA ACAATGTGCT
GTCGGGGGCA ATATCCTGGA AGCCCTGGCA CCCACGCTGG GTCGCGCTCG TACTGCACTT
GAAGATGAGC TCGCGAAAGT GACGGTTGCT GACATCGCAG CAGAAGTGGC GCGCCTTGGT
AAATTCACTG TCCCGTTAAC ATGGTGA
|
|---|
| Protein sequence | MPTSSRFVVA VHTLAALAVS DGRPLRSEDL AYSANTGAVV IRGLLSRLST AGLTRSQLGA
GGGALLARPA EKIRLLDVYE AVEDTELFSS HRVAPCEQCA VGGNILEALA PTLGRARTAL
EDELAKVTVA DIAAEVARLG KFTVPLTW
|
|---|
| |