| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2326 |
|---|
| Symbol | |
|---|
| ID | 1183977 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 2581120 |
|---|
| End bp | 2583375 |
|---|
| Gene Length | 2256 bp |
|---|
| Protein Length | 751 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637393705 |
|---|
| Product | extracellular solute-binding protein/sensory box protein |
|---|
| Protein accession | NP_792145 |
|---|
| Protein GI | 28869526 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0163187 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCACGC GCTTCAGACA ATTATTAATA CTGGCCACAG GCCTGTGCAT GAGCTGGAGC
AGCGCTCAGG CCGGCCCCGG CGCGGCCGAT CACTACACCC TGCTCGGCCG TTCGAGCCCG
GCGCACATGG ACGTGAAGCT GGACAGCAGC CAGTGGCAGT GGGTACGCGC CCAACGTGAA
CTGATTCTCG GCACGTCAAG CCCCGACTAT CCGCCGTTCG ACATCACCAT TTCAGGGACT
GATTACGAAG GCATCACTGC CGATTACGCG GGCATTATTT CGGATGCACT GGACCTGCCT
GTCAGGGTCC AGCGCTTCGA CAGCCGCGAG GCCGCCATGA AGGCGTTGAT CGCAGGTCAG
GTCGACCTGC TGGGCACCGC CAACGGTTTC GAGGCCGTCG AGCGCGATAT CAAGCTTTCA
CAACCTTATT CGGTGGACCA GCCCGTGCTG GTCACCCGGG TCGGCGACAC ACGACCGTTG
AACGAAGGCC TGCAAGGCAT GCGGCTGAGC ATGGTCTATC ACTATCTGCC GCCTGCCGAT
GTCGTAACGG CCTACCCCGG CGCCATTCTC AAAACCTATC CTTCGTTTCA GAATGCCATC
AATGCCGTGG CCTTCAACCA GGCCGATGTG TTTCTGGGCG ATACGATTTC CACCCAATAC
ATCATCAACA AGGGCTATCT GAACAATGTG CAAATGTCCA GTTTCGGCAA GCACGAGGCC
AATGGTTTCA GTTTTGCCGT CAGCGGCCAG AACACGCAAT TGCTGGGCGT CATCAACCAG
ACGCTGAAGG CGATTCCCGT CGATGAGCGC ATCGACATTT CCAGACGCTG GAGCACCGGC
AGCGACCTGA TGCTCACCGA CCAGAAACTG CAACTCACCC AACGTGAAGA ACGCTGGATT
GCCCAGCACC CGGTCGTGCG TGTGGTGGTC AACGAAGCTT ACGCACCGCT GACCTTCTTC
GATGCCAAGG GCAACTTTCG CGGCATCACT GCCGACTTGC TTGAACTGGT GCGCCTGCGC
ACCGGGCTCA AATTTGATGT CAAACGCTCG CCGAGCCTGA CCGACATGCA AAACCAGGTC
AGCGAGGGTC AGGCAGACAT GATCGGCGCG CTGGTGTCCA GCGATGTGCG CGAAGACCGT
CTGAGCTTCA GCCGGCCTTA CATCGACAAC TCGTTCGTAC TGGTTACCCG CAAGGACAAG
GGCTCACCCA GCTACCTGGA ACAGATGGAC GGCAAACGCC TGGCCATCAC TCAAGGCAGC
CCGATGCTCG ACTGGCTGCG CCGCAAGTAC CCGAGAGTCG TGCCACTGGA AATCGACAAC
CCGTTTCAGG CGCTGGACAT GCTGGCAGTG GGCAGAACGG AAGGTGCCGT CGTCTCGTTG
CTGAGCGCGG ATTACTTCCT GTCTTCCGGG ATCTTCGAGG AACGCTTGCA GATGACGGCC
ACGGTCGGCG AGGACCCGGC ATTGATCTCC ATGGCCACGT CGCGCAACGC TCTGGAACTC
AGCTCGATTC TCGACAAGGC GCTGGCGAGC ATCGCGCCGC AGGATCTGGC TGCGATCAAC
AACCGCTGGC GCGCCTACAC CCCCTCAAGC GCCAGCTGGC ACGACTACCA GCGGCTGATC
TATCAGATTG TGATTGGTGC GGGCCTGTTG CTGCTGGGCC TGCTGGTATG GAATGCCTGG
ATGCGCCGGC AGATACGCCA GCGCGAAGCC GCAGAGCGTG CCCTCAGCGA TCAGTACGAG
TTCATGAGGG CGCTGGTCGA CGGCACGCCT CATCCGATCT ACGTGCGCGA TCGCGATGGT
TTGCTGCAAA TGTGCAATGA CAGTTACCTC AGGGCCTTTT CCGCGCAGCG CGAAGACATC
ATCGGCAAGA GTGCTACCGA AAGGGTGCTG GGCAATGCTT TCGAGGCACG CGAATACGCT
GCCGATTATC AACGGGTCAT GGCCAGCAAC ACCGCGCTGA TTCTTGACCG CCCGCTGCAC
ATCGGCGACC GCCAACTGAC CATCTACCAC TGGATCCTGC CCTTTCGTGA CTCGCTGGGC
GAGGTACAGG GCATCATTGG TGGCTGGATC GACATCAGCG ATCGTCGCCA ACTGATCGAA
GACCTGCAGG CGGCCAAGGA ACAGGCCGAC GCCGCCAGCC GTGCCAAGAG TACTTTCCTG
GCGACCATGA GCCATGAAAT CCGCACGCCT ATGAACGCAA AGAAATCTGC AGCTTGGGGA
ATTGGTAGAA TTGCGGACAG GTGCAGAATC GTGTGA
|
|---|
| Protein sequence | MPTRFRQLLI LATGLCMSWS SAQAGPGAAD HYTLLGRSSP AHMDVKLDSS QWQWVRAQRE
LILGTSSPDY PPFDITISGT DYEGITADYA GIISDALDLP VRVQRFDSRE AAMKALIAGQ
VDLLGTANGF EAVERDIKLS QPYSVDQPVL VTRVGDTRPL NEGLQGMRLS MVYHYLPPAD
VVTAYPGAIL KTYPSFQNAI NAVAFNQADV FLGDTISTQY IINKGYLNNV QMSSFGKHEA
NGFSFAVSGQ NTQLLGVINQ TLKAIPVDER IDISRRWSTG SDLMLTDQKL QLTQREERWI
AQHPVVRVVV NEAYAPLTFF DAKGNFRGIT ADLLELVRLR TGLKFDVKRS PSLTDMQNQV
SEGQADMIGA LVSSDVREDR LSFSRPYIDN SFVLVTRKDK GSPSYLEQMD GKRLAITQGS
PMLDWLRRKY PRVVPLEIDN PFQALDMLAV GRTEGAVVSL LSADYFLSSG IFEERLQMTA
TVGEDPALIS MATSRNALEL SSILDKALAS IAPQDLAAIN NRWRAYTPSS ASWHDYQRLI
YQIVIGAGLL LLGLLVWNAW MRRQIRQREA AERALSDQYE FMRALVDGTP HPIYVRDRDG
LLQMCNDSYL RAFSAQREDI IGKSATERVL GNAFEAREYA ADYQRVMASN TALILDRPLH
IGDRQLTIYH WILPFRDSLG EVQGIIGGWI DISDRRQLIE DLQAAKEQAD AASRAKSTFL
ATMSHEIRTP MNAKKSAAWG IGRIADRCRI V
|
|---|
| |