| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2255 |
|---|
| Symbol | |
|---|
| ID | 1183906 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 2498021 |
|---|
| End bp | 2498857 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637393635 |
|---|
| Product | hydrolase, TatD family |
|---|
| Protein accession | NP_792075 |
|---|
| Protein GI | 28869456 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0084] Mg-dependent DNase |
|---|
| TIGRFAM ID | [TIGR00010] hydrolase, TatD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.481598 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACTCA TCGACATCGG CGTCAATCTG ACCAACGCAA GCTTCGCCTC GCAGCGACAG
GCGGTACTCG ACCGCGCCTA TGCCGCAGGC GTCGATCAAC TGGTGGTCAC CGGCACCAGT
GTCGAAGGCA GCGAACAAGC CTTGCAGCTG TGTCACGAAC TCGATGAAAG CGCGCAACGC
CTGTTTTGTA CCGCAGGCAT CCACCCGCAC TCAGCGAGCG ATTGGACCGG CGACACCGAG
AAACAGTTGC ATGCCCTGCT CAAGGAAAAT CGCGTGCGTG CCGTGGGTGA ATGCGGGCTG
GATTTCAACC GTGACTTCTC CCCTCGCCCT CAGCAGGAAA AGGTGCTTGA AGCGCACCTG
GTCATGGCCG TGGAACTGCA ACTGCCCGTC TTTCTCCACG AGCGCGATGC CAATCAGCGT
CTGCTGGACA TTCTGCGCGA CTACCGCGAC CGCCTGCCTG CGGCCGTGGT GCATTGCTTC
ACCGGGGAGC GGACGGCGCT GTTCAGCTAC CTGGACCTGG ACCTGCACAT TGGCATCACC
GGCTGGATCT GCGACGAACG GCGTGGCACT CACCTGCATG CGCTGGTGGG CAACATCCCG
CGCGGTCGAT TGATGCTGGA AAGTGATGCG CCCTATCTGC TGCCTCGCAG CCTGCGCCCC
AAGCCGAAAA ATGGTCGCAA CGAGCCCGCC TATCTGCCGG AAGTATTGCG CGAAGTGGCG
TTGCACCGGG GCGAAAGTCA GGAAGACCTG GCGCGTCATA GCACGGCCTG CGCACGGGCG
TTTTTCGACC TGCCGACCGT GCAACAGACA GAGGAAGAAA ATCTGCAGCT TTGTTGA
|
|---|
| Protein sequence | MQLIDIGVNL TNASFASQRQ AVLDRAYAAG VDQLVVTGTS VEGSEQALQL CHELDESAQR
LFCTAGIHPH SASDWTGDTE KQLHALLKEN RVRAVGECGL DFNRDFSPRP QQEKVLEAHL
VMAVELQLPV FLHERDANQR LLDILRDYRD RLPAAVVHCF TGERTALFSY LDLDLHIGIT
GWICDERRGT HLHALVGNIP RGRLMLESDA PYLLPRSLRP KPKNGRNEPA YLPEVLREVA
LHRGESQEDL ARHSTACARA FFDLPTVQQT EEENLQLC
|
|---|
| |