| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2231 |
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| Symbol | |
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| ID | 1183882 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 2459655 |
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| End bp | 2462603 |
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| Gene Length | 2949 bp |
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| Protein Length | 982 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637393612 |
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| Product | YD repeat protein |
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| Protein accession | NP_792052 |
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| Protein GI | 28869433 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.016497 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCCAA TCCATACTGC CCGATACAAC GCCTGGAATC AGTTGGAGCA GGAGACCGCC
CATGACTGGC TGGGGGCCAA ACCCTTGGCC AGCAGCACCC TTGGCTACCG CTACGATGAC
TGGAACCAGC GATGCTGCAC CACGACCGAT GACAACGTAC AGACTTATGA GTATTCAGAC
CCGATCGGCA GCGACGTACA TAAAGGCCCA ATCCAGAAAA CCTGGAAACA GAGTGGCGAC
CCGGAGGGCC GCATCAGTGG CCGCAGCGAA ACCTGGCTGA ATCTGTTCGG CAAACCGGAC
CGGATCCGGA CGCTGACCGC TGGTAAAACG GGTCGCAGCC GCACGCACAG CATGAGCCGC
AGCCGGAACC TGACCACGAC TGAGCAGGAA CTGAGCAGGC AGACCTTTCT GTACGACGGG
CTGGGACGCT GCACCGAGCA GCGCGATGCA CTCCAGCAAA GCACCCTGTT CAGCTACGAC
AACTGGTCAC GCATGGTCTC CTCCACGCTT GCAGACGGCA GCGTCATCAA CCGGAGTTAT
GCGCCGCAAA GCAGCAGTGA GCTGGCAACG ATGCTCGAGG TCGTGCACCA GAACGGCACC
ACCAGAACCG TGGCAGGTAC ACAGAAATTT GACGGGCTTG AGCGTGTGAC GCAGACCAAA
ACAGGTGACC GCGTCGAACA GTTCAACTAC GACGCCGGTG AGATGCAGCC CAGGTCGCGC
ACAACAGCCG GGCTGGACAA CATCAACTTT ACCTACACTC GGGCGCTCAC TGATCAGATT
TTTTCCAGCA CGGCTCCGGA TGAAACGGCC AAATTCGATT ATGACAAGAC CAGTGCCCGC
CTCATCGAAG CGACGAACCC GCAAGGCACG CGCACTTACC GCTATGACGT GCACAATCAA
CTGACGGGAG AGACTTGGGA CAATCTGCTG GGTCAGGCTT GGGAAACCCG ACACCAATCA
TCGCTGCTGG GTCGGCCGAT CAAGCGCACC GATCTCAAAA AAGGCGAGGC GGCGGGCGCA
GAGACCCGTT ACGACTACGA CACGCTCGGC AGAATCAGGT TTATCAACCA GAGCAACCTG
CGCACCACAA TCGACTATGA CGTGCTGGGC CAGCTCTGCA AGGTGGCCAC CGAGGACCTG
CAGGCCGGAA CTGGCGTGAT CATCGACATG GAATACGACG ACCAGGGACA GGAAATTCTC
AGAACCCAGA CCGCAAGCAA CCAAGCGGCG TTGACCTTGA CTCAAACGTG GGCAGTGGAC
GGGCTTTTGA AAACCCGCGA CCTGCAACAG GCGGGTAGCC CCCTGCTGCA CGAAACGTTT
AGCTACGACC CCAGAGGCCG CCTGACACTG GTGAATTACC TGGGTAGCAG CTTGCCGAGA
GACGAACTGC AAAGGGAGAT GACCAGACAA ATATTCAGCT TCGACGAGCT GGACAACATT
ACGCTATGCC AGACCAGGTT TACCGATGGC ACCTCTGAGC GAGCAGCTTT CAAATACGGC
AGCCCCGGCG ACGATAAGCA TAAAGACCGC TGCCAGCTTT TGAGTATTGC CTACACGCCG
CCCAGAAAAA CACCGGACCC GACATTCAGT TACGACGCCA ACGGTAACCA GCTTAAAGAC
GAGCATGGCA ACAGTCTGCA TTACGATAGC CAGAGCCGCC TGCTGCAGGT CGCAGAAACC
GGCGGTGCCC CTATCAGCCA ATACCGTTAT GACGGCCACA ATCAACTGGT CGCCACCAGG
GATGGCAATG AAAGCGAGAT TTTGCGGTTC TATGAGGGTC ATCAACTGAG CAGCACGGTG
CAGGAAGATC AACGCACTCA GTACCTGCAT CTCGGCGAAC AGCCGCTGGG CCAGCAGATT
GTGGACGACG CCGAGCAAAC CCTGTTGCTA CTGACTGACG CAAACCAGAG CGTTATGGGT
GAATTTCAAC AAGGCCAGCT GCGCAAGGCG GTCTACAGTG CCTACGGGGA GCGCCACAGC
GAGGAGGCGC TGCTGAGCAC TGCCGGGTTT AACGGTGAAG TACGCGAAGC CGCCAACGGC
TGGTATCTGT TGGGCAATGG CTACCGGGCC TACAACCCTC TCCTGATGCG CTTCCACAGC
CCGGATTTTC TCAGCCCCTT CGCCGAAGGC GGCGTCAACC CCTACACCTA CTGCCTGGGC
AACCCCATCG CCCTGCGCGA CCCGACAGGA CATGATGCCA GCGGTCAGAC TGGCCGGTTG
AGACGGCCCG ATGAGGGGGC TTTGCCAATG CAACAAGGTG GCGGAGATAT CATGGGTTGG
GTGGGTGTAG GAATAGGCGT TGTTTTCACC GTATTGGGCG TTGCCGCTAC CATAGCCACG
TTAGGAACAG CCACACCGGT TACCGGCCCG GTAACTGTCC TGGGCATTTC CATGACCGCC
AGCGCTGCCG CGGCCGTTTC GACAGTCTCG ACCGGTGCGT TGATCGTCGG TACGGCATTG
ACAGCGGCTT CAACTACGGC CAATACAGTT GCCATTGTAA ATAACGATCA GACGGCCGGA
GAAGTCGGCG GCTGGTTGGG TATTGCCGCT GTGCCCGTTG GCTTGGTAGG GTTTGGCGCG
GGGGCTGTGG TGGCGAGGGC AGTTGCGGCT GCGGCTAAAG TTGCGGCTGC CAACGCTGGT
ACGATCGGTG TCCGCAGCGT CAGCAGAATA GGCCTCGCTG CTGCTGGTGC CCGCAGAACC
ATTTCCAGCG CTGCCAGCAG CGCTCGGCGC CAAATCAGCA ACATGTTAGG CAGAATCTTA
CCCCGTGCTC TAAACAGGAC TGCTGCTACT GCACGCCGGA TTCCAAGCGT TACAAGTGGC
GGATCAGGAC CAGGGCCATC ATTATTTACA CAGACTACCT TTAACGAATC GATTGGGATG
ACGCAGACCA CTATTTTTTC AACGAATGCG AGCGGAATCC CACCGGCCAC GCAGGTAACT
CGAATCTAG
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| Protein sequence | MKPIHTARYN AWNQLEQETA HDWLGAKPLA SSTLGYRYDD WNQRCCTTTD DNVQTYEYSD
PIGSDVHKGP IQKTWKQSGD PEGRISGRSE TWLNLFGKPD RIRTLTAGKT GRSRTHSMSR
SRNLTTTEQE LSRQTFLYDG LGRCTEQRDA LQQSTLFSYD NWSRMVSSTL ADGSVINRSY
APQSSSELAT MLEVVHQNGT TRTVAGTQKF DGLERVTQTK TGDRVEQFNY DAGEMQPRSR
TTAGLDNINF TYTRALTDQI FSSTAPDETA KFDYDKTSAR LIEATNPQGT RTYRYDVHNQ
LTGETWDNLL GQAWETRHQS SLLGRPIKRT DLKKGEAAGA ETRYDYDTLG RIRFINQSNL
RTTIDYDVLG QLCKVATEDL QAGTGVIIDM EYDDQGQEIL RTQTASNQAA LTLTQTWAVD
GLLKTRDLQQ AGSPLLHETF SYDPRGRLTL VNYLGSSLPR DELQREMTRQ IFSFDELDNI
TLCQTRFTDG TSERAAFKYG SPGDDKHKDR CQLLSIAYTP PRKTPDPTFS YDANGNQLKD
EHGNSLHYDS QSRLLQVAET GGAPISQYRY DGHNQLVATR DGNESEILRF YEGHQLSSTV
QEDQRTQYLH LGEQPLGQQI VDDAEQTLLL LTDANQSVMG EFQQGQLRKA VYSAYGERHS
EEALLSTAGF NGEVREAANG WYLLGNGYRA YNPLLMRFHS PDFLSPFAEG GVNPYTYCLG
NPIALRDPTG HDASGQTGRL RRPDEGALPM QQGGGDIMGW VGVGIGVVFT VLGVAATIAT
LGTATPVTGP VTVLGISMTA SAAAAVSTVS TGALIVGTAL TAASTTANTV AIVNNDQTAG
EVGGWLGIAA VPVGLVGFGA GAVVARAVAA AAKVAAANAG TIGVRSVSRI GLAAAGARRT
ISSAASSARR QISNMLGRIL PRALNRTAAT ARRIPSVTSG GSGPGPSLFT QTTFNESIGM
TQTTIFSTNA SGIPPATQVT RI
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