| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2227 |
|---|
| Symbol | |
|---|
| ID | 1183878 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 2454099 |
|---|
| End bp | 2455211 |
|---|
| Gene Length | 1113 bp |
|---|
| Protein Length | 370 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637393608 |
|---|
| Product | fimbrial protein, putative |
|---|
| Protein accession | NP_792048 |
|---|
| Protein GI | 28869429 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3539] P pilus assembly protein, pilin FimA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0719141 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACATG TACTGAATGC ACTGGCGCTT GCCGTGACTG CCGCCAGCCT CGTTCATGGC
ACAACCGCTA TGGCCGAGTC TTACGATTCG GATCCGGGCG ACAGCTGTTA CTGGCTATCC
AGCCCCGGGA TGAAAGAATT CCGCCGTGAC ATTGGCACGA TCTACATCCC CCGAGATGCC
AAAATCGGCA GCGTTATCGG CAAGATCGAT ATGGAGGCAT ACACCCCCGA CCTGGCAAGA
CTATCGGCCG CTTGCGCCAA TGACGGCACC GCTCTACTGG AGTTCAGGGC GACGGCAACG
GCCCCTATCC ATTCTGGTGG TCTGGAACCG ATCAATGGTG AAGACATCAA CGGCAAAGTA
CTTAAAACCA ATATTTCAGG AGTCGGCATA AGGGTAAAAC TGGAGCATCC GTACTCAGGT
GGGTGTAACA ATTGCTTCAC ACCGGTCGAC GGAAATCCTG TCGTACCGTT TTTGGCTCTC
AATGAATATA ACAACCTGCT CGTGCCAATC AGCATCGTGG GCCTGAGAAA CTTTATCACG
CTGGTCAAGA TCGGGCCTAT ACCTCCCGGC CCTAATGTGC TGGATGGCAG CGAGCTGTGG
TCAGGAAGCC TTACTGCGCT GGGCAAAGTC ATGAGATACG GCGTCACCGG CACGGTGATT
CAGGCTCAAT GCACCGTAGG CGCTCCAAGC AGCGCAGCCC CGGTACAACT GGGTGACTGG
GACCGAGCAG AGTTTACCGG GCCCGGTTTC ACCACTACGA AGGTCCCCTT CCATATTGCC
CTGAGTAATT GCGAGACCGA CACCGGCGCC GGCTTTATAG CAACAGCCCA CGTCCAGCTC
GACGGCGTCG ACGGCTCGGC GCCGGTCGGC CCCGTCAATA GCGGCGTTTT CAGCCTGACG
ACCGATTCGC AGGCTCGTGG CATGGGGATT CAAGTGCTCA AGGCCGACGG CTCGACGCCC
ATGGAACTGC AAACCGAAGT CCCGTTGATT GCTATCACGC CAGGTAACAT GTCACTCAAC
TTTTATGCGC GCTTCTATCA GACCGAAGCC AGCAGCGAAG TCCGCCCAGG CAAAGCCAAA
GGTGCGCTGA GCTTTACCCT TACCTACAAA TAG
|
|---|
| Protein sequence | MKHVLNALAL AVTAASLVHG TTAMAESYDS DPGDSCYWLS SPGMKEFRRD IGTIYIPRDA
KIGSVIGKID MEAYTPDLAR LSAACANDGT ALLEFRATAT APIHSGGLEP INGEDINGKV
LKTNISGVGI RVKLEHPYSG GCNNCFTPVD GNPVVPFLAL NEYNNLLVPI SIVGLRNFIT
LVKIGPIPPG PNVLDGSELW SGSLTALGKV MRYGVTGTVI QAQCTVGAPS SAAPVQLGDW
DRAEFTGPGF TTTKVPFHIA LSNCETDTGA GFIATAHVQL DGVDGSAPVG PVNSGVFSLT
TDSQARGMGI QVLKADGSTP MELQTEVPLI AITPGNMSLN FYARFYQTEA SSEVRPGKAK
GALSFTLTYK
|
|---|
| |