| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2225 |
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| Symbol | |
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| ID | 1183876 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 2450057 |
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| End bp | 2452378 |
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| Gene Length | 2322 bp |
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| Protein Length | 773 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637393606 |
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| Product | autotransporter, putative |
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| Protein accession | NP_792046 |
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| Protein GI | 28869427 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.192143 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGCTCC GCCCCCCCTG CGCCCTGCAT CTTTTGCCCG TTGCCATAAA GTGCCTGGCA
CTTGTTCCTG CGCTATTGAT CAGCAATCAA GTGTTTGCCG CTACTGTCCC GGTAAAAGAC
GAGGTGATGG ACATCGATCA ATCCAGCCCC GTCAATAATT ACGTGTTGTC CAGCGACGCA
ACGCTGAATG TGAATGGCGG AAGCCAGCAC GGCAGGGTTG ACTCTACGGG CTCCATGCTG
AATATCTCGG CCGGGTCGGC CCTTGTGGCT GCCACGTTGC GTGGCGGTTC CGAGCTCACC
ATGAATGGCG CTGCGATCAG CAATGGCCTT AGCATCACTA ACAGTCTCGG GACTGTTTCC
AACAGCACCA TCGCCAATGC CAGCGGTATC GGTCTGAGCG TCAATCGATT ACGGGACCTG
ACAACCGGCT CCAGCGTGAA CCTGACCAAC AGCTCCAGCA GCGGCGCATT GGCGGGTACA
GTGGTCACGC ATTTCAGTCA GCTCGGTCTG ACGGGCTCGC AATTGGCAGG CACCGGCGTC
GACGGGGTAG GTTTGCGCCT TAATGCCGGT GCAGCGCAGG CCAGTGCCAG CAGTATCGTG
GGCACGGTGA ATGGCGTTGC GATCAGCTCC GAGGAAGTCT ACACAGAGGC GTCACTGAAG
CTGGACAGCA CGCAGGTGGT CGGGCAGACG GGGGCCGCTA TCCGGATTGC CCCATTGATA
TCAAGGTTGC CAGGCTCCGT TGTGGCGTTA GATGTCAGTA ATGGTTCCAG CCTGACGGGT
GGCAACGGCA ATATGCTGGA AGTCACCGGC GGCTCCTCGG CCGTGATGAA TGTGTCGGCA
AGCAGCCTGA GTGGCAACGT GCAGGTCGAG TCCGCGAGCG CCGTCACACT CAATCTCGAC
AACAGCAGCA TGACGGGGGA TGTACTTGCC GAGTCGGGTG CGCTCGCCGA TGTACTGCTC
GACAACAACT CAGTGCTGAC CGGGCACCTG GAAAACACCC GCAGCGTCGC CATCAACAAT
GGCGCGCAGT GGGCCATGAT CGGCAACGGC AACCTTGCTG AGTTGACCCT GAACGGTGGC
TCGGTCCGGT TTGGCGACGC TGCCGGTTTT TACACACTGT CGGTCGCCAA TCTGTCCGGC
AATGGCACGT TCATCATGGA TGTGGATTTT GCCGCGGGTC GCACAGACTT TCTCGATATC
ACCGGCAGTG CGACCGGCAG TCACTCGCTG CTGATCGGCA GCACCGGCAC TGAACCGTCT
GCCGACACCA GCCTGCATGT GGTGCGCGCT GCCGCCGGCG ATGCGGATTT TTCCTTGGTT
GGCGGGGCGG TCGACCTCGG TGCCTGGTCC TACGATCTGG TCAAGCAGGG TGCCAATGAC
TGGTACCTTG ACGCGCAGAC CCGCAAGGTC AGCCCTGCTG CCGCCACTGT AGTCGCGTTG
TTCAATACGG CACCCACCGT ATGGTATGGC GAGCTGACCT CACTGCGCAC GCGCATGGGC
GAATTGCGTC ATAACGGTGG GCAGTCGGGC GCGTGGATGC GCACCTACGG CAACAAGTTC
AACGTCTCCG ATGCGTCAGG TTTCGGCTAT CAGCAAACTC AGCAGGGCTT TTCGCTGGGC
GCGGACGGCA AAGTCCCGAT GGGTGACGGG CAATGGCTGG CGGGTGTGAT GGCAGGGCAA
AGCAGTTCAG ACCTGAGTCT GGACCGTGGT GCCAGTGGCA AAGTCGACAG CTACTACGTC
GGTGCCTACA GCACATGGCT GGACAGCGAT ACGGGCTACT ACTTCGACGG CGTGCTCAAG
TTCAACCGTT TCAATAACAA AGCCCGCGTC AATCTGAGCG ATGGCACCCG TACAAAAGGC
GATTACAGCA ACTCGGGTGT CGGTGCGTCG CTGGAGTTCG GACGCCATAT CAAGCTGGAC
AATGGTTACT TTGTCGAGCC CTACAGCCAG TTGGCCGGCG TGGTCGTCGA AGGCAAGGAT
TATGAGCTGG ACAACGGCAT GCGTGCCGAA AACGACCTGA CGCGTTCGCT GGTGGGCAAA
CTCGGTGCGA CGACCGGGCG CAACTTCGAT CTTGGGCAAG GCAGGACGGT CCAGCCTTAT
GTGCGTACGG CCTGGGTTCA CGAGTTTGCA AAAAACAACG AGGTTCAGGT GAACGACAAC
GTCTTCAACA ACGACTTGTC GGGTTCGCGT GGCGAGTTGG GCATTGGTAT AGCCGCCTCC
CTGTCGGAGC GCTTTCAGGT GCATGCCGAT TTCGAGCACA GCAATGGCGA TAAAGTCGAG
CAACCCTGGG GTGCCAGCGT AGGTATTCGT TACAGCTGGT AA
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| Protein sequence | MMLRPPCALH LLPVAIKCLA LVPALLISNQ VFAATVPVKD EVMDIDQSSP VNNYVLSSDA
TLNVNGGSQH GRVDSTGSML NISAGSALVA ATLRGGSELT MNGAAISNGL SITNSLGTVS
NSTIANASGI GLSVNRLRDL TTGSSVNLTN SSSSGALAGT VVTHFSQLGL TGSQLAGTGV
DGVGLRLNAG AAQASASSIV GTVNGVAISS EEVYTEASLK LDSTQVVGQT GAAIRIAPLI
SRLPGSVVAL DVSNGSSLTG GNGNMLEVTG GSSAVMNVSA SSLSGNVQVE SASAVTLNLD
NSSMTGDVLA ESGALADVLL DNNSVLTGHL ENTRSVAINN GAQWAMIGNG NLAELTLNGG
SVRFGDAAGF YTLSVANLSG NGTFIMDVDF AAGRTDFLDI TGSATGSHSL LIGSTGTEPS
ADTSLHVVRA AAGDADFSLV GGAVDLGAWS YDLVKQGAND WYLDAQTRKV SPAAATVVAL
FNTAPTVWYG ELTSLRTRMG ELRHNGGQSG AWMRTYGNKF NVSDASGFGY QQTQQGFSLG
ADGKVPMGDG QWLAGVMAGQ SSSDLSLDRG ASGKVDSYYV GAYSTWLDSD TGYYFDGVLK
FNRFNNKARV NLSDGTRTKG DYSNSGVGAS LEFGRHIKLD NGYFVEPYSQ LAGVVVEGKD
YELDNGMRAE NDLTRSLVGK LGATTGRNFD LGQGRTVQPY VRTAWVHEFA KNNEVQVNDN
VFNNDLSGSR GELGIGIAAS LSERFQVHAD FEHSNGDKVE QPWGASVGIR YSW
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