Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2159 |
Symbol | |
ID | 1183806 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 2370963 |
End bp | 2372933 |
Gene Length | 1971 bp |
Protein Length | 656 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637393537 |
Product | macrolide ABC efflux protein |
Protein accession | NP_791981 |
Protein GI | 28869362 |
COG category | [V] Defense mechanisms |
COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.103755 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCACACGC CGCTGATCGA CCTGCGGGGC ATCCGCAAAT CCTACGGCGG TGGCGACAGC CCGCGCGTCA ACGTGCTGCG CGGCATCGAC CTGTCGATCC ATGCCGGCGA GTTCGTGGCA ATTGTCGGCG CGTCCGGCTC CGGCAAATCG ACGCTGATGA ACATCCTCGG CTGCCTGGAC CGCCCGACCT CGGGTGAATA CCTGTTCGCC GGGGAAAACG TTGCCGAACT GGGCGGCGAC GAACTGGCAT GGCTGCGTCG CGAAGCGTTT GGCTTCGTGT TTCAGGGCTA CCACCTGATC CCGTCCGGCT CGGCGCAGGA AAACGTCGAG ATGCCGGCCA TCTACGCCGG TACGCCCGCC GCAGAGCGCC ACGCACGGGC TGCTGCCCTG CTCGACCGCC TGGGCCTGGC GTCACGCACT GGCAACCGTC CACACCAGTT GTCCGGTGGC CAGCAGCAAC GGGTGTCCAT CGCCCGCGCC TTGATGAATG GCGGGCACAT CATTCTTGCC GACGAACCGA CCGGTGCACT GGACAGCCAC AGCGGTGCCG AGGTCATGAC CTTGCTGGAC GAACTGGCCA GCCAGGGGCA TGTGGTGATT CTGATTACCC ACGACCGGGA AGTCGCCGCG CGTGCCAATC GGGTCATCGA GATCAGCGAC GGTCTGGTGA TCAGCGATAC CGCCCGCGAT CTGTCCACGC CACGTTCAGC CAACCCGGCC GCCTTGCAGG CCGTCGATCT GCGCAAGCGC CTGAGCGAGG GCAGTGGCAG TCACGGTGCC TGGAAAGGCG AGCTGCTCGA CGCGATTCAG GCGGCGTGGC GCGTCATGTG GGTCAACCGT TTTCGTACTG CGCTGACGTT GTTGGGCATC GTCATCGGCG TCGCGTCGGT GGTGGTCATG CTGGCGGTCG GTGAAGGCAG CAAGCGCCAG GTCATGGCGC AGATGTCTTC GTTTGGCTCA AACATCATTT ATCTGAACGG CAAGGCACCC AACCCGCGCG CGCCCAAAGG CGTCATCACC CTGGAAGAAG TCGCCGCGCT GGGCGAGTTG CCCGAGGTAA AAATGATCAT GCCGGTCAAT GGCGGACAGG CCGGGGTGCG CTTCGGCAAT GTCGATCACT CAAGCTACGT CGGCGGCAAC GACACGCACT TTCCGGCGAT TTTCAACTGG CCGGTGGCCG AAGGCAGCTA TTTCAGCGAG GCCGACGAGC AAGGCGCAGC CGCCGTGGCA GTGATTGGTT ACAAAGTCCG GCAGAAACTG TTCGGCGATC GCATCGACCC TATCGGTCAA TACATCCTGA TCGAAAACGT GCCGTTTCAA GTGGTCGGCG TGCTCCAGGA AAAAGGCGCG ACCTCGGGCG ATCTGGACAG CGATAACCGC ATCGCCATTC CGTATTCGTC GGCCAGCATC CGCCTGTTCG GCTCGCAGGA CCCTGAGTAC ATCACCATAG CCACCCGCGA CGCCAATAAC GTCAAGCAAG CCGAAGCCGC GATTCGCACC CTGCTGCAAC GCCTGCACAA CGGCAAGCAG GATTACGAGC TGACCAACAA CGCCGCAATG ATCCAGGCCG AAGCGCGCAC CCAGAACACC CTGTCACTGA TGCTCGGCTC GATTGCCGCC ATTTCGCTGC TGGTCGGCGG CATCGGTGTG ATGAACATCA TGCTGATGAC CGTGCGTGAA CGTACCCGTG AGATCGGCAT CCGCATGGCC ACCGGGGCGC GGCAGCGTGA CATTCTGCGC CAGTTCCTCA CCGAAGCGGT GATGCTCTCG GTGGTCGGCG GGCTGGCCGG TATCGTACTG GCGCTGGCGA TGGGCGCGGC TTTGCTGGCG AGCAAGGTGG CGGTGGCCTT CACCCTGTCT GCGGTGATTG GTGCCTTTGC CTGCGCGCTC GTCACCGGCG TGATTTTCGG TTTCATGCCT GCCCGCAAAG CTGCCCGGCT TGACCCGGTG GCGGCCCTTA CCAGTGAATG A
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Protein sequence | MHTPLIDLRG IRKSYGGGDS PRVNVLRGID LSIHAGEFVA IVGASGSGKS TLMNILGCLD RPTSGEYLFA GENVAELGGD ELAWLRREAF GFVFQGYHLI PSGSAQENVE MPAIYAGTPA AERHARAAAL LDRLGLASRT GNRPHQLSGG QQQRVSIARA LMNGGHIILA DEPTGALDSH SGAEVMTLLD ELASQGHVVI LITHDREVAA RANRVIEISD GLVISDTARD LSTPRSANPA ALQAVDLRKR LSEGSGSHGA WKGELLDAIQ AAWRVMWVNR FRTALTLLGI VIGVASVVVM LAVGEGSKRQ VMAQMSSFGS NIIYLNGKAP NPRAPKGVIT LEEVAALGEL PEVKMIMPVN GGQAGVRFGN VDHSSYVGGN DTHFPAIFNW PVAEGSYFSE ADEQGAAAVA VIGYKVRQKL FGDRIDPIGQ YILIENVPFQ VVGVLQEKGA TSGDLDSDNR IAIPYSSASI RLFGSQDPEY ITIATRDANN VKQAEAAIRT LLQRLHNGKQ DYELTNNAAM IQAEARTQNT LSLMLGSIAA ISLLVGGIGV MNIMLMTVRE RTREIGIRMA TGARQRDILR QFLTEAVMLS VVGGLAGIVL ALAMGAALLA SKVAVAFTLS AVIGAFACAL VTGVIFGFMP ARKAARLDPV AALTSE
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