| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1937 |
|---|
| Symbol | flgE-2 |
|---|
| ID | 1183582 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 2117067 |
|---|
| End bp | 2118827 |
|---|
| Gene Length | 1761 bp |
|---|
| Protein Length | 586 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637393315 |
|---|
| Product | flagellar hook protein FlgE |
|---|
| Protein accession | NP_791760 |
|---|
| Protein GI | 28869141 |
|---|
| COG category | [N] Cell motility |
|---|
| COG ID | [COG1749] Flagellar hook protein FlgE |
|---|
| TIGRFAM ID | [TIGR03506] fagellar hook-basal body proteins |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.233363 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCATTCA ATACAGCGAT CAGTGGTATT AACGCTGCAA ACAAAAGGCT GGAAGTGGCG
GGCAACAATA TTGCCAACTC CGGGACCATC GGTTTCAAAT CATCGCGGGC GCAGTTCTCG
GCGCTGTATT CATCTGCCCA GTTGGGCAGT GGCCGCAATG CGATTGGCGA CGGTGTGCGC
CTTGCCGCAA CTCAGCAGAA TTTCAATCAG GGCGACAGCA TGACCACGTC CGGCAACCCG
CTGGACATGC GCATTCAGGG CAACGGTTTT TTTGTGGTGA GCGACAAAGG ATCGCTTGCC
TATACCCGGG CCGGAGCTTT CCTCAAGGAT GCGGCCAATT TCGTCGTCGA CAGCGAGGGC
GGACGCCTGC AGGGATACGC TGCCAACGAT AATGGCGAGA TCATGCGCGG CCTGCGCACC
GACCTGCAGA TTGACACCTC GAATGTGGCT GCCAGAGCCA CGACGCGGGT TGCCGAGAAC
ATTAACCTCG ACGCCTCGCT GCCGTCACTT GCCCGGTTGC CGGCGTTCGA CCCTGCCGAC
CCCGCCACTT ACACCCGTGC CATCGGCCGA ACCATTCAGG ACGCAGGGTC TGGCACTGGT
GCTGGCGCGG TGCCCGCGGC AGATCATGAA CTCAAGCAGT ATTTCGTCAA GACCGGCGAC
AGCCAGTGGT CGATGTATGT GCTGGTCGAC GGGCGTAATC CGGTGGACCC CAACAGCGTG
GCCCCTTTAC ACGTCACCCT CGAGCAAAAG CCCAACGGGT CACTGTCGTA CAGCGGCAAT
AGTCAGCACC TGCGCAAGAT TTCCGACACC GAGTTTGCCC TGCAGGGCTG GCGGCCGGCT
CACGAGGTGA ATGGGGCCTG GATGAGCAAT GGCGCGGCCA GTGGCGGTGC GGTTTCGCTG
CCGTTGATCG ATGGGTCAGC CAGTATGCTT GATCCGGCCG ACGCGGTGAT GGATCGACCC
GTTCCGGCGT TTGATTCGCT GGACCTGAAA ACCTACAGCG ATATGTTTGC CAATGCGATT
TTTGACAGTC AGGGCAATCA GCACGAGCTG AAACAGTATT TCGTCAAGGA TGGCAACAAC
AGTTGGCGCA TGCATGTACT GATTGACGGG CGCAACCCGC AGATGCCCGA TTCCACCGAG
CCGCTGACGG CTAACATCGT TTTTGATTCC GGCGGTTCGG TGCGTTCGCT GACCGGCAGT
TCGGGGCTGG TGAGCACCAA CGGCGGCGGG CTGCAGCTTA ACGGCTGGAC GCCGGCAATG
CCTGCCGAGC GGGTAACGGG GCAGGATCGC TGGGTGTCCA ACGGCGCGGC CGGCAGTGCA
AACGGCATTG AACTGGACTT CACCAACCTG CTACAGCACA ACGCTGCCAG CTCGCGTTCC
TCGACCCACG TGGACGGGCA TGCGGCGGGG CAGTTGAGCA GTCTGAGTGT GGGGCGCGAT
GGCATTCTGC GTGCCGGTTT TACCAACGGC ATGAACAAGA ATATCGGCCA GGTGATCCTT
GCCAGCTTCG CCAACCCGCA GGGCTTGCAG GCGCGCAGCG ATACGCGCTG GACAGAGTCC
GCAGAGTCGG GCGTTGCCGA TTACGAGGTG CCGGGCGTCG GCACGCTGGG CAGTCTGGTC
GGCGGCGCGC TGGAGGGCTC CAATGTGGTA TTGGCCGATG AACTGATTGC GTTGATTCAG
GCGCAGACGG CGTATCAAGC CAACTCCAAG GCGATATCGA CGGAGGCGAC GGTCATGCAG
ACGCTGATTC AGTCAACCTG A
|
|---|
| Protein sequence | MSFNTAISGI NAANKRLEVA GNNIANSGTI GFKSSRAQFS ALYSSAQLGS GRNAIGDGVR
LAATQQNFNQ GDSMTTSGNP LDMRIQGNGF FVVSDKGSLA YTRAGAFLKD AANFVVDSEG
GRLQGYAAND NGEIMRGLRT DLQIDTSNVA ARATTRVAEN INLDASLPSL ARLPAFDPAD
PATYTRAIGR TIQDAGSGTG AGAVPAADHE LKQYFVKTGD SQWSMYVLVD GRNPVDPNSV
APLHVTLEQK PNGSLSYSGN SQHLRKISDT EFALQGWRPA HEVNGAWMSN GAASGGAVSL
PLIDGSASML DPADAVMDRP VPAFDSLDLK TYSDMFANAI FDSQGNQHEL KQYFVKDGNN
SWRMHVLIDG RNPQMPDSTE PLTANIVFDS GGSVRSLTGS SGLVSTNGGG LQLNGWTPAM
PAERVTGQDR WVSNGAAGSA NGIELDFTNL LQHNAASSRS STHVDGHAAG QLSSLSVGRD
GILRAGFTNG MNKNIGQVIL ASFANPQGLQ ARSDTRWTES AESGVADYEV PGVGTLGSLV
GGALEGSNVV LADELIALIQ AQTAYQANSK AISTEATVMQ TLIQST
|
|---|
| |