| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1889 |
|---|
| Symbol | |
|---|
| ID | 1183534 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 2063891 |
|---|
| End bp | 2065276 |
|---|
| Gene Length | 1386 bp |
|---|
| Protein Length | 461 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637393267 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_791712 |
|---|
| Protein GI | 28869093 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5383] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.048244 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACTG CACGCTTTGC CGACCCGGAC CAGATTCGCG CCGGGTTCTC ACGCGCCATG
TCGCAGATGT ACCAGCACGA AGTGCCGCTT TACGGCACGC TGATGGAACT GGTGAGCGAG
GTCAACGCGC AGGTCATGAG CCGCGACAGC CAGGTGCTGA ACAGTTTGCG CCAGACGGGC
GAAATCCAGC GTCTGGACAT GGAGCGTCAC GGCGCGATTC GCGTGGGTAC GGCGCAGGAA
CTGGCCACCC TCGCCCGCCT GTTTGCGGTG ATGGGCATGC AGCCGGTCGG TTACTACGAC
CTGACGGCAG CCGGCGTGCC GGTCCACTCG ACTGCCTTTC GTGCTGTGCA CGAGCAGGCA
TTGCAGGTCA GTCCGTTTCG GGTGTTCACC TCGTTGCTGC GTCTGGAGCT GATCGAAAGC
GACAGCCTGC GCGAGTTCGC CAGTCGTGTG CTGGCCAAGC GCACGATCTT CACGCCTGGC
GCCTTGGCGC TGATCGAAAA GCATGAAGCA GACGGCGGCT TGAGCGAGCC CGACGCCGCC
GAGTTCATTC AGCAAGCGCT GGAAACCTTT CGCTGGCATC ACACGGCGAC GGTCTCGCTC
GACGAGTACC GGCAATTGAA TGCTCAGCAT CGCCTGATCG CCGATGTGGT GGCGTTTCGT
GGCCCGCACA TCAACCACCT GACGCCGCGA ACCCTGGACA TCGACGCCGT GCAGAGCGGC
ATGCCCGGCA AGGGCATTAC GCCCAAGGCC GTGGTTGAAG GACCGCCACC TCGTCAGTGT
CCAATCCTGT TGCGCCAGAC CAGCTTCAAG GCGCTGGAAG AACCGATCAG CTTCATCGGT
CAGGGTGGCA GTCAGTCGGG CAGTCACTCG GCACGCTTCG GCGAGATCGA ACAGCGCGGC
GCCGCCCTGA CGCCCAAAGG CCGCGAGCTG TATGACCGGC TGCTGAACGA GGCCCGCGAT
GCACTGGGCG AGTTCCCCAA TGAGGCCAAT GCCGTGCGCT ATGCCGGGCT ACTGGAAAAG
GCCTTTCAGG CATTCCCGGA CAGCCATGAT GAAATGCGTG CGCAGGGTCT GGCGTATTTT
CGCTATTTCC CGACTGACAC GGGCGTTGCG GTCCGTGTAT CCGGCACGCT GGAGCAGCTT
ATCGAAGCGG GTCATGTACG CTTCGAGCCT TTGGCGTACG AAGACTTCCT GCCCGTCAGC
GCGGCAGGTA TCTTCCAGTC CAACCTGGGT GACAACGCCC AGGCGCACTA CGCAGCGAAT
TCGAATCGGC AGGATTTTGA GCGGGCGCTG GGGCGTGGGA CGCTTGATGA ACTGGCGCTG
TACGCCGACA CCCAGCGGCG GTCACTGGAA GACTGCGCCG AGGTGCTGGG GTTGAATGAG
TCATAA
|
|---|
| Protein sequence | MSTARFADPD QIRAGFSRAM SQMYQHEVPL YGTLMELVSE VNAQVMSRDS QVLNSLRQTG
EIQRLDMERH GAIRVGTAQE LATLARLFAV MGMQPVGYYD LTAAGVPVHS TAFRAVHEQA
LQVSPFRVFT SLLRLELIES DSLREFASRV LAKRTIFTPG ALALIEKHEA DGGLSEPDAA
EFIQQALETF RWHHTATVSL DEYRQLNAQH RLIADVVAFR GPHINHLTPR TLDIDAVQSG
MPGKGITPKA VVEGPPPRQC PILLRQTSFK ALEEPISFIG QGGSQSGSHS ARFGEIEQRG
AALTPKGREL YDRLLNEARD ALGEFPNEAN AVRYAGLLEK AFQAFPDSHD EMRAQGLAYF
RYFPTDTGVA VRVSGTLEQL IEAGHVRFEP LAYEDFLPVS AAGIFQSNLG DNAQAHYAAN
SNRQDFERAL GRGTLDELAL YADTQRRSLE DCAEVLGLNE S
|
|---|
| |