Gene PSPTO_1885 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_1885 
Symbol 
ID1183530 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand+ 
Start bp2058772 
End bp2059413 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content58% 
IMG OID637393263 
Productefflux protein, LysE family 
Protein accessionNP_791708 
Protein GI28869089 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0676486 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATATAT CGTTGCTGCT GATTTACATG TTCAGCGTGT TCATGCTGAT CATCACCCCG 
GGCCCGGTGG TGGCGCTGAT CGTCAACACC AGCCTGGCGT GCGGGCCCAA ACGCGCGATG 
TTGACGGCGC TGGGCACCAA CTGGGCGTCG CTGGTGCTGG TGATGGTCGC GGCATTGATC 
CTGACGGGCA CGTTGTCGGT GAGCGTCAGC ATGCTCAACT GGATCAGTCT GGTCGGCTGT 
TTCTTTATCG CTTACCTGTC GGTGCAGGCG CTGGAGCAGG CGTTGCGTTA CGCCCCGTCG 
CAGCCCGAAG CCGCGCCAGC GCCGTTGCCT GCGCGCAGCC GGCACAGCGG GCTGGTGACC 
GGCTTTCTGG TAGGGATTTC CAACCCTAAG GACATTATCT TCTTCGTCTC GTTTTTCCCG 
CAGTTCATCC ACGTCACCGA GTCGTTCAAG GGCAGCATCG CTTTGTTGTC GGTGCTGTGG 
ATCATCATTG ACCTGTCGAT CCTGTTCGCC TACATCTTCC TCATGCGTCA GAAACTGGCC 
TTGAAGTACA AGCGCAAGAT CGAAATCGTT TCCAGCGTGA CCTTGCTGCT GATCGCGTTG 
GGCGGGATTT TCTATTCGGG CTCGACGCTG TTGAATCAGT AA
 
Protein sequence
MDISLLLIYM FSVFMLIITP GPVVALIVNT SLACGPKRAM LTALGTNWAS LVLVMVAALI 
LTGTLSVSVS MLNWISLVGC FFIAYLSVQA LEQALRYAPS QPEAAPAPLP ARSRHSGLVT 
GFLVGISNPK DIIFFVSFFP QFIHVTESFK GSIALLSVLW IIIDLSILFA YIFLMRQKLA 
LKYKRKIEIV SSVTLLLIAL GGIFYSGSTL LNQ