Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1758 |
Symbol | |
ID | 1183395 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 1930396 |
End bp | 1930965 |
Gene Length | 570 bp |
Protein Length | 189 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 637393130 |
Product | transcriptional regulator, TetR family |
Protein accession | NP_791583 |
Protein GI | 28868964 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.295684 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTTACG CGCTCGATCA TAAGGCCCAA ACCCACCAGC GCATCGTCAA GGAAGCGTCC ATGCGCTTTC GTCGCGACGG CATTGGTGCT ACGGGCTTGC AACCATTGAT GAAAGCACTC GGCTTGACCC ATGGCGGTTT CTACGCGCAT TTCAAATCCA AGGATGATCT TGTCGAACAG GCATTGAGTC ACGCTCTCGA CAATGTAAAA GGAATCACAA GCGAAGTTTT CGCCAGACAG GACTCGCTCA GTGAATTCAT CGATCTCTAT CTCTCGACTA CCAGCCGCGA TGCGCAGGAC GGCGGATGTC CGCTGCCTAC CATGTGCCTG GAACTTGGAC AGCGCGACCA ACCCAGCGAG ACGACGGATA AAATCGTCCT TCACTTGCTG GAACTGTTTG AGAACTCCCT CGCGGGGACC GGTCTTGAGC CCAGAAGCGT ACCGATCCTG TCGGCACTGG TAGGCGGGCT GGTACTTGCC CGCAGTGCTG CGGACGACAA GTTGTCGGAG CGTATCCTGA ATACGACCCG CGACTACCTC AAGCAGGAGA TAAAAAAGAG CACTAACTGA
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Protein sequence | MRYALDHKAQ THQRIVKEAS MRFRRDGIGA TGLQPLMKAL GLTHGGFYAH FKSKDDLVEQ ALSHALDNVK GITSEVFARQ DSLSEFIDLY LSTTSRDAQD GGCPLPTMCL ELGQRDQPSE TTDKIVLHLL ELFENSLAGT GLEPRSVPIL SALVGGLVLA RSAADDKLSE RILNTTRDYL KQEIKKSTN
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