| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1739 |
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| Symbol | |
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| ID | 1183376 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1907254 |
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| End bp | 1908180 |
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| Gene Length | 927 bp |
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| Protein Length | 308 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637393111 |
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| Product | GGDEF domain protein |
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| Protein accession | NP_791564 |
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| Protein GI | 28868945 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTTTC CTACCCAGAC CCATGCAATC GATTTCGATA CGGCTGAACT GCAACGCCTC
GGTTTTCGAA ACCGACCCGA TGCTGTGCTC CCGCCCCCGT CACTGCCCGA GCTGGTCTAC
CAGCTTGGGC GACAACTGCA GACCAGCCTG GAAGCCGAGC GGATATTGAC CCTGTTTTTT
CAGGGTGTGC AACGCTTCCT GCCATTGAGC GGCCTGGTCT ACCGACACAT CGAAAGCGAC
CTGCACCTGC GCCTGGGCGA AATGTCATCC GACAGCGCCA GCTTTCACCT GCGCCACGAG
GGCAAGTGCA TCGGCGAACT GGAGTTTCAA GGCGCCAAGC CTTTCGATAC CCGGCAGCTG
AGCGACCTCG AATCCCTGCT GGTCTGCCTG GTCTACCCGC TGCTCAATGC ACTGCTGTAC
CGCATTGCCA CGCAGACCGC ACTGCGCGAC CCGTTGACCA GTACCGGCAA CCGCATCGCG
ATGGATCAGG GCCTGGCTCG TGAAATAGAA ATTTCGAGCC GCCACAAGCA ACCGCTGTCA
CTGCTGATGC TGGATATCGA TCATTTCAAG AAAGTGAACG ATGAATACGG CCATCACACT
GGCGATGACG TGCTGAAAAC CGTGGCACAA AGCCTGAAAG CGCAGTTGCG CAATATTGAT
CGGGTGTTCC GTTATGGCGG CGAAGAGTTC GTGGTGATTC TTTCCAACAC CGGCGCCACG
GCGGCCGAAC TGATCGGCGA GCGCCTGCGT CAGGCGGTGC GCAACCTAGA GTTTCGCGAG
CTTGACCCGG CACTGACCAT GACGGTCAGC CTGGGCTGCT CGACACTGCT GCCGACGGAA
ACCGCCGACA GCCTGCTGCG CCGGGCAGAC AACGCTCTGT ACGTCGCCAA GCGCGAAGGC
CGCAACCGTC TCGCCATGGC CAGCTAG
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| Protein sequence | MNFPTQTHAI DFDTAELQRL GFRNRPDAVL PPPSLPELVY QLGRQLQTSL EAERILTLFF
QGVQRFLPLS GLVYRHIESD LHLRLGEMSS DSASFHLRHE GKCIGELEFQ GAKPFDTRQL
SDLESLLVCL VYPLLNALLY RIATQTALRD PLTSTGNRIA MDQGLAREIE ISSRHKQPLS
LLMLDIDHFK KVNDEYGHHT GDDVLKTVAQ SLKAQLRNID RVFRYGGEEF VVILSNTGAT
AAELIGERLR QAVRNLEFRE LDPALTMTVS LGCSTLLPTE TADSLLRRAD NALYVAKREG
RNRLAMAS
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