| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1637 |
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| Symbol | |
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| ID | 1183274 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1792171 |
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| End bp | 1794648 |
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| Gene Length | 2478 bp |
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| Protein Length | 825 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637393009 |
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| Product | ABC transporter, permease protein, putative |
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| Protein accession | NP_791462 |
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| Protein GI | 28868843 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[V] Defense mechanisms |
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| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component
[COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGAGTTT TCTACTGGAC CCTGCGCGCA TTACTGAGCC ACTGGCGACG TCATCCCGTG
CAATTTTTCA GCGTGCTGAC CGGTTTGTGG TTGGCCACCG CACTGCTGAC CGGCGTGCAG
GCGCTCAATA GTCAGGCACG GGAAAGCTAC CAGCGTGCCA GCCAGTTGAT TGGCGGCGAG
CCGCAGACCA GCATCGCAGC GCCCGACGGC GGGCTGTTTG CTCAGGAACT GTACATACAG
CTGCGCCGTG AAGGCTGGCC GGTGTCGCCA GTCATACGCG GACGAATCAC GCTCAAGGGG
CTGGAAGGCC AGCGCTTGCA ATTGCTCGGC ATCGAGCCGC TGACGTTGCC GAACAGCACA
CTGGCCGGAC AGACACTGGA CTCTGATCAG GTCGTTGATT TTCTCACCCC GCCGGGAGCG
ACCTGGGTAT CACCGCAGAC CCTTGAGTCG CTCGGGCTTG AAGAAGGCCG GCAGCCACTG
GGCGAAAATG GCGTTGCCTT GCCGCCGCTG CGCGCCAAAC CCGATATGGC CCCCGGCGTG
CTACTCACTG ACATCGGCTT CGCTCAAGCA TTGCTCGGCC AGCCCGATGA ATTGTCCAGC
CTGCTGCTGC ACAAGGACTT CGCGGCGCGC AACCCGCAGT TGCCGCCAGC ACTGAACGGT
CAGTTGGTCA TCAGCAAGAC GGGCGAAGAA AACAATCTGC AGCGGCTGAC AGAAAGCTTT
CACCTGAACC TGAGCGCCTT GGGCGTTCTG TCGTTCGGAG TGGGCCTGTT TATCGTCCAC
GCGGCCATTG GCCTGGCACT GGAACAACGC CGCGGCCTGC TGCGTAACCT GCGTGCCTGT
GGTGTCAGTG CGCGAATGCT GATCACGGCC CTGAGCGTCG AACTGGGCGC GATGGCCCTG
CTCGGTGGTC TGCTGGGTGT GGTCAGCGGC TATTTTCTGG CCAGCTTGCT GCTGCCGGAT
GTAGTGGCCA GTTTGCGCGG TCTTTACGGT GCCGAAGTCG CTGGCCAACT GAACCTCAGC
CTGTGGTGGT GGCTCAGCGG CATCGGGCTG AGCCTGCTTG GCGCTTTGCT GGCCGGTATC
AACAGCCTGT TGCGTGCGGC ACGTCTGCCT TTGCTTGCCT TGGCAGATGC CCAGGCATGG
CAGCAGGCCC ACGCACGCTG GCTGCGGCGA CAAGCCTGGG TTGCAGCGGC CGGTGCGCTC
GTCGCACTAC TGGCTTTGCT GTTCGGCAAC AGCCTGTTAC TGGGTTTTGT GTTGATGTCC
GCCGTGTTAT TCAGTGCAGG GCTCGGGCTA CCGGTGCTGC TGGATGCCAT GCTCGGCGGC
CTGCTGACAC GCAGTCGTTC GGTGCTGGGG CAATGGTTTC TGGCTGATTG CAGGCAGCAG
TTGCCCTCGT TGAGCCTGGC ATTGATGGCC TTGCTGCTGG CGATGGCGGC CAATATCGGC
GTGGGCAGCA TGACCTCGGG CTTTCGCCAG ACGTTCAATA GCTGGCTGAA CCAGCGTCTG
ACTGCCGAGC TCTACGTCAG CCCGCAAGAC CCGACGCAGG CTCAACCTTT ACAAACCTGG
CTGAGCCAGC AAGCGCACAT CAGCGCAGTG ATACCCAACT GGCAAGTAGC GGTACAGGTT
CAGGGATGGC CCGCCGATCT GTTCGGCGTG GTCGATCACA CCATCTACCG CCAGCACTGG
GAGCTGCTTG AATCAGTAAA GGGTGATCCG TGGAACCTTT TGCGTGACGG CGATACGGTG
ATGCTCAGCG AACAACTGGC GCGCCGTCTC AAGCTCACGC TGAACGATAC CTTGAACATC
CCCGTGCCCA ACGGCCAATG GACACCGCGC ATCGTCGGGA TCTACGCCGA CTATGGAAAC
CCCAAGGGCC ATCTGCTGGT CAACGAAAAA CATCTGCTTG CCCACTGGCC GCAACTGAGC
CCGTTCCGTT TCAACCTGAG GGTCGATCAG GCCGCGATTC CGCCTCTGGT CAAGCAACTG
CAAGACCGCT TTGCGCTCGA CGACAATCAC ATCATCGATC AGAGCCAGAT CAAGCGTTGG
TCAACCCAGA TCTTCGAACG TACATTCTCA GCCACCGCCG CCCTCAATAG CCTGACGCTG
GGCGTGGCTG GCGTGGCGCT ATTCATCAGC CTGCTGACCC AGAGCCAGAG CCGCCTCGGG
CAACTCGCCC CGTTGTGGGC GCTGGGTGTG ACGCGACGGC AACTGATGTT GCTCAACCTG
GGGCAAACCT GGCTGCTGGC CCTGTTGACG CTGGCATTCT CCATACCGCT GGGCCTGATG
ATCGCGTGGT GTCTGGATGC GGTGATCAAT GTTCAGGCGT TTGGCTGGCG CCTGCCACTG
CAAGTATTCC CACTGCAATT GCTGCAACTC ATGTCACTGG CAATACTAGC CACCCTGCTG
GCCTCGGCCT GGCCGCTGCT GAAGCTGTAC CGCAGCCGCC CAGCGGATTT ACTGAGGACC
TTTGCCAGTG AACATTAA
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| Protein sequence | MRVFYWTLRA LLSHWRRHPV QFFSVLTGLW LATALLTGVQ ALNSQARESY QRASQLIGGE
PQTSIAAPDG GLFAQELYIQ LRREGWPVSP VIRGRITLKG LEGQRLQLLG IEPLTLPNST
LAGQTLDSDQ VVDFLTPPGA TWVSPQTLES LGLEEGRQPL GENGVALPPL RAKPDMAPGV
LLTDIGFAQA LLGQPDELSS LLLHKDFAAR NPQLPPALNG QLVISKTGEE NNLQRLTESF
HLNLSALGVL SFGVGLFIVH AAIGLALEQR RGLLRNLRAC GVSARMLITA LSVELGAMAL
LGGLLGVVSG YFLASLLLPD VVASLRGLYG AEVAGQLNLS LWWWLSGIGL SLLGALLAGI
NSLLRAARLP LLALADAQAW QQAHARWLRR QAWVAAAGAL VALLALLFGN SLLLGFVLMS
AVLFSAGLGL PVLLDAMLGG LLTRSRSVLG QWFLADCRQQ LPSLSLALMA LLLAMAANIG
VGSMTSGFRQ TFNSWLNQRL TAELYVSPQD PTQAQPLQTW LSQQAHISAV IPNWQVAVQV
QGWPADLFGV VDHTIYRQHW ELLESVKGDP WNLLRDGDTV MLSEQLARRL KLTLNDTLNI
PVPNGQWTPR IVGIYADYGN PKGHLLVNEK HLLAHWPQLS PFRFNLRVDQ AAIPPLVKQL
QDRFALDDNH IIDQSQIKRW STQIFERTFS ATAALNSLTL GVAGVALFIS LLTQSQSRLG
QLAPLWALGV TRRQLMLLNL GQTWLLALLT LAFSIPLGLM IAWCLDAVIN VQAFGWRLPL
QVFPLQLLQL MSLAILATLL ASAWPLLKLY RSRPADLLRT FASEH
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