Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1590 |
Symbol | |
ID | 1183227 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 1749231 |
End bp | 1749959 |
Gene Length | 729 bp |
Protein Length | 242 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637392962 |
Product | hypothetical protein |
Protein accession | NP_791415 |
Protein GI | 28868796 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR02001] conserved hypothetical protein, proteobacterial |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.557379 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCTCAGCC ATCGCTTACA CGCGTTGTTT ATCGGCGCCC TGTTTGTCTG TCAGTCCGTC TCTGCCCAGG TTCTGGAGCG GGACCTGGGT GCTTTCGACC TGAAGCTCGC CACCACCCCC ACGCGCAGCA TGGCACAAGG CCTGGTAACA CCCAGCGGCG GCTCGGGTTC TTTTCATGGC GGGCTGGACC TGACCCACGA GAGCGGCTTC TACTTCGGCC AATGGGCGCC GAACATGGGC TTCGCTTCCG ACACGGGAAT GGAACTGGAT TCCTACATGG GCTTCAAGAA GCCGTTCGAC AGCACCCTCG GTTACGAGCT GGGGATGATT CGCTACAGCT ACCCGGACAC CAGCCAGATC GACAGTCACG AATTCTATGC CGGGCTGCGA ATGCAAAGCA GCCGCATTGG TGCTGCGTTC AGCAACGATG TGGGCACGCG TGACAGCACG GTGTTTGTCG ATCTGGGGGC CATCGAACAA TTGGGCGTCG GAGTGCGCAT GCAGTACGCC AACCACCAGT TCGACACCCC GCAATCTTCC GCTGACGGCG GTTTGATCAA CGGCTTCAAC GACTGGTCAC TGAACCTGTC ACGCCCCTGG CTGGGCATCG ACATGAACCT CATCTACAGC GGTTCAAGCC TGAGCGGCGG CGATTGCAGC GTCTACAGCG GCCACAACGC ACGCTGTGAA GGGACGTTCA CGCTCAAGGC CGTGCGTTCG TTTTTTTAA
|
Protein sequence | MLSHRLHALF IGALFVCQSV SAQVLERDLG AFDLKLATTP TRSMAQGLVT PSGGSGSFHG GLDLTHESGF YFGQWAPNMG FASDTGMELD SYMGFKKPFD STLGYELGMI RYSYPDTSQI DSHEFYAGLR MQSSRIGAAF SNDVGTRDST VFVDLGAIEQ LGVGVRMQYA NHQFDTPQSS ADGGLINGFN DWSLNLSRPW LGIDMNLIYS GSSLSGGDCS VYSGHNARCE GTFTLKAVRS FF
|
| |