| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1574 |
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| Symbol | |
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| ID | 1183211 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1734733 |
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| End bp | 1736043 |
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| Gene Length | 1311 bp |
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| Protein Length | 436 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637392946 |
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| Product | mechanosensitive ion channel family protein |
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| Protein accession | NP_791399 |
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| Protein GI | 28868780 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0668] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.332059 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATATTC AATCGCTTTG GCTTCGTACT CAGGAACTAT GGGGCATGCT CGACCAGCAT
CCGTGGGTGC GCACCGGGCT GGCGCTGATC CTGTTGCTGA CCACCGCGCT GGTGCTCGGC
CGCGTGGCGC GCTTTGTGGT GCTGTACACC GTCAGGATGC TCGGTCGTCA GCCGTCGTTG
CACTGGATCA ACGATTTTCG CCATAACAAG GTTTTCCACC GACTGGCGCA AATGGTGCCT
TCGCTGGTTG TCCAGTTCGG GCTCAACCTG GTGCCCGGCC TGACCGCCAC GGGCAAGAAC
GTCATCGGCA ACCTGGCCAT GGCGTTCACC ATTCTGTTCA TGACCCTGGC CATCGGCGCA
CTGCTCAACG CCCTGCTGGA CATCTACGCC CGCACCGAGC ACGCCCGCAC CCGCTCGATC
AAAGGCTACG TGCAACTGTC GAAGATGATT CTGTATGTGT TCGCCGCGAT CATCATCGTC
GCCACACTGA TCGACCGTTC GCCGCTGTTG CTGCTGTCCG GCCTCGGCGC CATGTCGGCG
GTCATTCTGT TGGTCTACAA AGACACCCTG CTGTCGTTCG TCGCCAGCGT ACAGCTGACC
AGCAACGACA TGCTGCGCGT CGGCGACTGG ATCGAAATGC CGCAAGTGGG CGCCGATGGC
GACGTGGTGG ACATCACCCT GCATACCGTG AAGGTGCAGA ACTTCGACAA AACCATCGTC
TCCATCCCGA CCTGGCGCTT GATGTCCGAG TCGTTCCGCA ACTGGCGCGG CATGCAGCAA
TCCGGCGGAC GGCGCATCAA ACGCAGCCTA TTCATCGACG CCAGCGGCGT GCGCTTCGTA
CGCGACGATG AAGAACAACA ACTCATGCAA ATCCACCTGC TCACCGACTA CATCGGCCGC
AAACAAGCCG AACTGCTGGC CTGGAACGAA GCGCAAGGCA ACGTCGCCCA AATGTCCGCC
AACCGCCGAC GCATGACCAA CATCGGCACC TTCCGCGCCT ACGCCCTGGC GTACCTGAAA
AGCCATGTGG ACATCAACTC CGGCATGACC TGCATGGTCC GCCAGCTGGA GCCGACTTCG
CAGGGCATCC CGCTGGAAAT CTACTGCTTC ACGCGTACTA CGGTGTGGGT GGATTACGAG
CGGATACAGG GGGATATTTT CGACTATCTG ACTACGGTGA TGCCGGAGTT CGGGTTGAGT
TTGTATCAGC AGCCGAGTGG GGCGGATATG CGGGTTGGGT TGCGGGGGCA GTCCGACCGG
GGCGGGAATG CGCAGACGGC AGAGACGTTT CCTACAGAAC GTCAAGGCTG A
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| Protein sequence | MDIQSLWLRT QELWGMLDQH PWVRTGLALI LLLTTALVLG RVARFVVLYT VRMLGRQPSL
HWINDFRHNK VFHRLAQMVP SLVVQFGLNL VPGLTATGKN VIGNLAMAFT ILFMTLAIGA
LLNALLDIYA RTEHARTRSI KGYVQLSKMI LYVFAAIIIV ATLIDRSPLL LLSGLGAMSA
VILLVYKDTL LSFVASVQLT SNDMLRVGDW IEMPQVGADG DVVDITLHTV KVQNFDKTIV
SIPTWRLMSE SFRNWRGMQQ SGGRRIKRSL FIDASGVRFV RDDEEQQLMQ IHLLTDYIGR
KQAELLAWNE AQGNVAQMSA NRRRMTNIGT FRAYALAYLK SHVDINSGMT CMVRQLEPTS
QGIPLEIYCF TRTTVWVDYE RIQGDIFDYL TTVMPEFGLS LYQQPSGADM RVGLRGQSDR
GGNAQTAETF PTERQG
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