| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1402 |
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| Symbol | hrcV |
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| ID | 1183038 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1539401 |
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| End bp | 1541488 |
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| Gene Length | 2088 bp |
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| Protein Length | 695 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637392774 |
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| Product | type III secretion protein HrcV |
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| Protein accession | NP_791229 |
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| Protein GI | 28868610 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4789] Type III secretory pathway, component EscV |
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| TIGRFAM ID | [TIGR01399] type III secretion protein, HrcV family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCAGA TCATCAACTT TCTGAACATG GTCGCCTTGT CGGCCATGCG TCGCTCAGAG
GTGGTCGGCG CGTTCTTCGT GATTGCCATC GTATTCATGA TGATCACGCC ACTGCCCACC
GGGCTGGTCG ACGTTCTGAT CGCGGTGAAC ATCTGTATTT CCTGCCTGCT GATCATGCTG
GCTATGCACC TGCCAAGGCC GCTGGCGTTT TCAACCTTCC CTGCGGTGCT GCTGCTGACC
ACCATGTTCC GTCTGGCGTT GTCGATCTCG ACCACGCGGC TGATTCTGCT CAACCAGGAC
GCCGGACACA TCGTCGAGGC CTTCGGCCAG TTCGTCGTGG GCGGCAACCT GGCAGTAGGC
CTGGTGATCT TCCTGATCCT GACGGTGGTC AACTTTCTGG TGATCACCAA GGGCTCGGAA
CGGGTTGCAG AAGTGGGCGC CCGATTCACG CTGGACGCCA TGCCCGGCAA ACAGATGTCC
ATCGACAGTG ACTTGCGGGC CAACCTGATT TCGGTCTACG AAGCACGCAA CCGCCGCTCG
GAACTGAACA AGGAAAGCCA ACTGTTCGGT GCGATGGACG GGGCAATGAA GTTCGTCAAC
GGCGACGCCA TTGCCAGCCT GATCATCGTT GCCATCAACA TGATCGGTGG TATTTCCATC
GGCGTGGTGC AGCACGGCAT GACCGCCGGC GACGCCTTGC AGCTCTATAC CGTACTGACC
ATCGGTGACG GCCTGATCGC GCAGATTCCG GCGCTGCTGA TCTCTGTTAC CTGCGGCATG
ATCATCACCC GCGTACCCAA CACCGAAGCA GGCGTTGAAG CCAACATCGG TCGCGAAATC
GCCGAGCAGA TCACCAGCCA GCCCAAGGCC TGGATCATTG CCGCAGTGGC GATGCTCGGC
TTCGCGGCAC TGCCGGGTAT GCCAACCGGC GTGTTCATCA CCATTGCGAT CATTTGCGGT
GCCGGCGGCA TGCTGCAACT GCAAAGGGCC AAACCCAAGG CAGAAGAACA AGGCGCCGTT
GCGGTAGCGC CGGAGATGAA TGGCAAGGAA GACTTGCGCA CGTTCTCCCC CAGCCGTCAG
TTTGTCCTGC AGTTTCACCC TGGCCAGAAC AGCGCGCTGG TCGATGCGCT GGTCAGTGAG
ATCCGTCAAC GACGCAACCG GCTGGTGGTG CAGTTCGGCC TGACGCTGCC CTCCTTCATC
ATCGAGTACG TGGACCATCT GCAGCCAGAC GAATTTCGTT TCACGGTCTA CGACGTCCCG
ATGCTCAAGG CGACCTTCAC CCAGACACAC GTGGCAGTGG ATGTCCGCCA GTTCAACGGT
GAGGACGTGC CCGCCGCCAT CTCCGGCACC ACGGATCGCC AGGAAGATCA GTGGGTCTGG
CTACCGGCCG AGCAAGGCGG CGAGCTGGCC ACCGTCAGTT CCATGACCCT CATCACCGAA
CGCATGGAGC GCGCGCTGCA ATCCTGTGGC CCGCAGTTCA TCGGCTTGCA GGAAACCAAA
GCCATTCTCG GCTGGCTGGA ATCGGAGCAG CCTGAGCTTG CTCAGGAAAT GCAGCGAGTG
CTGACCCTCA CGCGGTTCTC GGCGGTTTTG CAGCGACTGG CCTCCGAGTG CGTGCCATTG
CGGGCGATCC GGGTGATTGC CGAAACACTG ATCGAGCATT GCCAGCACGA GCGCGACACC
AACGTGCTGA CCGACTATGT GCGAATCGCC CTCAAGTCCC AGATTTACCA CCAGTACTGC
GGTGCCGATG GCTTGCAGGT GTGGTTGCTG ACACCGGAAA GCGAAGGCTT GCTGCGTGAC
GGTCTGCGCC AGACACAGAC AGAAACGTTT TTTGCGCTGA GCAACGACAT CAGCCAGATG
CTCGTGCAAC AGCTGCATAT CGCCTTTCCG TTGCGCGCGC CTGAACAGGC GGTGCTGCTG
GTTGCACAGG ATCTGCGCAG CCCGCTGCGC ACCTTGTTGC GAGAAGAGTT CTATCACGTT
CCCGTACTGT CTTTTGCGGA AATCAGCAAC GCAGCCAAGG TCAGGGTCAT GGGTCGCTTC
GACCTTGAAG ATGACCTCGA ACCGATGGAC AACGAGCATG CCGCTTGA
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| Protein sequence | MNQIINFLNM VALSAMRRSE VVGAFFVIAI VFMMITPLPT GLVDVLIAVN ICISCLLIML
AMHLPRPLAF STFPAVLLLT TMFRLALSIS TTRLILLNQD AGHIVEAFGQ FVVGGNLAVG
LVIFLILTVV NFLVITKGSE RVAEVGARFT LDAMPGKQMS IDSDLRANLI SVYEARNRRS
ELNKESQLFG AMDGAMKFVN GDAIASLIIV AINMIGGISI GVVQHGMTAG DALQLYTVLT
IGDGLIAQIP ALLISVTCGM IITRVPNTEA GVEANIGREI AEQITSQPKA WIIAAVAMLG
FAALPGMPTG VFITIAIICG AGGMLQLQRA KPKAEEQGAV AVAPEMNGKE DLRTFSPSRQ
FVLQFHPGQN SALVDALVSE IRQRRNRLVV QFGLTLPSFI IEYVDHLQPD EFRFTVYDVP
MLKATFTQTH VAVDVRQFNG EDVPAAISGT TDRQEDQWVW LPAEQGGELA TVSSMTLITE
RMERALQSCG PQFIGLQETK AILGWLESEQ PELAQEMQRV LTLTRFSAVL QRLASECVPL
RAIRVIAETL IEHCQHERDT NVLTDYVRIA LKSQIYHQYC GADGLQVWLL TPESEGLLRD
GLRQTQTETF FALSNDISQM LVQQLHIAFP LRAPEQAVLL VAQDLRSPLR TLLREEFYHV
PVLSFAEISN AAKVRVMGRF DLEDDLEPMD NEHAA
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