| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1399 |
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| Symbol | hrpO |
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| ID | 1183035 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1536580 |
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| End bp | 1537026 |
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| Gene Length | 447 bp |
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| Protein Length | 148 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637392771 |
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| Product | type III secretion protein HrpO |
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| Protein accession | NP_791226 |
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| Protein GI | 28868607 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.919251 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGACGAAA CACTCGAGGA AGACCCGCAA CGGGAGGCTC TGGAACAGGT GATCAGCCTG
CTGACGCCGC TGCGCCAGCA TCGTCAGGCA AGTGCCGAGC GAGCACATCG CCAGGCGCAG
GTGGAACTGA AATCGATGCT CGACCACTTA TCAGAGACCC GGGCGTCACT GGACCAGGAA
CGTGACAACC ACAAGCGACG TCGCGAGAGC CTGTCGCAGG ACCATCTGCA AAAAACCATC
AGCCTGAACG ATGTCGACCG ATGGCATGAG AAAGAAAAAA ACATGCTCGA CCGCCTGGCC
TTTATCCGCC AGGACGTGCA GCAACAGCAA TTGCGGGTAG CCGAACAGCA GACGTTGCTT
GAACACAAAC GCCTGCAAGC CAAAGCGTCT CAGCGCGCGG TCGAGAAACT CGCCTGCATG
GAGGAGACGC TCAACGAAGA AGGTTAA
|
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| Protein sequence | MDETLEEDPQ REALEQVISL LTPLRQHRQA SAERAHRQAQ VELKSMLDHL SETRASLDQE
RDNHKRRRES LSQDHLQKTI SLNDVDRWHE KEKNMLDRLA FIRQDVQQQQ LRVAEQQTLL
EHKRLQAKAS QRAVEKLACM EETLNEEG
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