| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1389 |
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| Symbol | hrcC |
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| ID | 1183025 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 1528890 |
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| End bp | 1530989 |
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| Gene Length | 2100 bp |
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| Protein Length | 699 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637392761 |
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| Product | outer-membrane type III secretion protein HrcC |
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| Protein accession | NP_791216 |
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| Protein GI | 162533078 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCAAGG CCTTAATGTG GTTGCCTTTA TTGTTGATCG GGGTGATCCC TGCCACGTGG
GCGGTCACCC CAGAAGCCTG GAAACACACC GCCTACGCCT ATGATGCCCG GCAGACCGAG
TTGTCTACTG CCCTGGCTGA CTTTGCCAGG GAGTTCGGCA TGTCGCTCGA CATGTCGCCT
GTCCAGGGCA AGCTCGATGG CCGTATTCGT GCTCAGAACC CTGAAGAGTT TCTTGAGCGG
CTGAGTCAGG AATACCACTT CCAGTGGTTC GTCTATAACG ACACGCTGTA TGTCAGCCCT
TCCAGCGAGC ACACCTCGGC GCGCATCGAA GTCTCGCCGG ATGCGGTGGA CGACCTGCAA
ACGGCGCTGA CCGATGTCGG TCTGCTGGAC AAGCGTTTTG GCTGGGGCTC GCTGCCTGAC
GAAGGCGTGG TTCTGGTTCG TGGTCCGGCC AAATACGTGG AGTTTGTGCG CGACTACAGC
AAGAAAGTCG AAAAGCCCGA CGAGAAGGCC GACAAGCAAG ATGTTGTCGT GCTGCCACTC
AAATACGCCA ACGCGGCTGA TCGGACTATT CGCTACCGTG ACCAGCAGTT AGTGGTGGCC
GGTGTCGCCA GTATTCTTCA AGAGCTGCTG GAAAGCCGTT CGCGTGGCGA AAGCATTGAC
AGCGTGAACC TGTTGCCGGG GCAGGGCAGC AGTGTTGCCA ACAGCACAGG TGTCGCGGCC
GCCGGCCTGC CTTACAACCT GGGCTCCAAT GGTATCGATA CGGGAGCACT GCAACAGGGC
ATTGACCGCG TATTGAACTT CAACAGCAAA AAAACTGCCA AGGGTCATGC CTCAGGCAAG
GCAAATATCC GCGTAAGCGC TGATGTGCGT AACAACTCCG TATTGATTTA CGACCTGCCA
GAGCGCAAGG CCATGTACCA GAAACTGGTC AAGGAGCTGG ACGTTCCGCG CAACCTGATC
GAAATCGATG CGGTCATTCT CGACATCGAC CGCAATGAAC TGGCTGAACT GTCCAGTCGC
TGGAATTTCA ATGCCGGCAG CGTCGGAGGT GGTGCCAACC TGTTTGATGC AGGCACCAGT
TCAACGTTGT TCTTGCAGAA CGCCAGCAAG TTTTCTGCCG AATTGCATGC GCTTGAAGGC
AATGGTTCTG CGTCAGTCAT CGGCAACCCG TCGATCCTGA CCCTGGAGAA TCAGCCTGCA
GTGATCGACC TCAGTCGCAC CGAATACCTG ACGGCCACTT CCGAGCGGGC CGCTGACATT
CTGCCCATCA CGGCGGGCAC CAGCCTTCAA GTGATTCCGC GTTCGCTGGA CAACGATGGC
AAGCCTCAGG TGCAAATGAT CGTGGACATC GAGGATGGCC AGATCGATGT GTCGACGATC
AATGACACCC AACCCAGTGT GCGCCGAGGC AATGTCAGCA CCCAGGCGGT GATTGCCGAG
CACGGCTCGC TGGTCATCGG CGGCTTCCAC GGTCTGGAAG CCAATGACAG GATTCACAAG
ATCCCGCTGT TGGGCGACAT TCCCTATATC GGCAAGCTGC TGTTCCAGTC CCGCAGTCGC
GAACTGAGTC AGCGCGAGCG GCTGTTCATT CTGACCCCTC GACTGATCGG CGATCAGGTC
AATCCAGCAC GCTATGTACA GAACGGCAAC CCCCATGACG TCGATGACCA GATGAAGAAA
ATCAAGGAAC GACGTGACGG AGGCGAGCTG CCAACGCGGG GCGACATCCA GAAAGTCTTT
ACCCAAATGA TCGACGGCGC CGCCCCGGAA GGCCTGCGCG CTGGCCAGAC CCTGCCCTTT
GAAACCGATA GTCTGTGTGA TCCGGGCGAA GGTCTGACGC TTGATGGGCA GCGCTCGCAG
TGGTTCGTCA AAAAAGACTG GGGTGTTGCT GTGGTGGTTG CGCGTAACAA CACGGACAAG
CCGGTACGTA TCGACGAAAG CCGATGCGGC GGTCGCTGGG TCATCGGCGT TGCGGCCTGG
CCTCATGCAT GGCTGCAGCC GGGTGAAGAA AGTGAGGTGT ACATCGCTGT GCGCCAGCCG
CAGATATCTA AAATGGCCAA AGAAAGCAGG CCGTCACTGC TCCGGGGAGC GAAACCATGA
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| Protein sequence | MRKALMWLPL LLIGVIPATW AVTPEAWKHT AYAYDARQTE LSTALADFAR EFGMSLDMSP
VQGKLDGRIR AQNPEEFLER LSQEYHFQWF VYNDTLYVSP SSEHTSARIE VSPDAVDDLQ
TALTDVGLLD KRFGWGSLPD EGVVLVRGPA KYVEFVRDYS KKVEKPDEKA DKQDVVVLPL
KYANAADRTI RYRDQQLVVA GVASILQELL ESRSRGESID SVNLLPGQGS SVANSTGVAA
AGLPYNLGSN GIDTGALQQG IDRVLNFNSK KTAKGHASGK ANIRVSADVR NNSVLIYDLP
ERKAMYQKLV KELDVPRNLI EIDAVILDID RNELAELSSR WNFNAGSVGG GANLFDAGTS
STLFLQNASK FSAELHALEG NGSASVIGNP SILTLENQPA VIDLSRTEYL TATSERAADI
LPITAGTSLQ VIPRSLDNDG KPQVQMIVDI EDGQIDVSTI NDTQPSVRRG NVSTQAVIAE
HGSLVIGGFH GLEANDRIHK IPLLGDIPYI GKLLFQSRSR ELSQRERLFI LTPRLIGDQV
NPARYVQNGN PHDVDDQMKK IKERRDGGEL PTRGDIQKVF TQMIDGAAPE GLRAGQTLPF
ETDSLCDPGE GLTLDGQRSQ WFVKKDWGVA VVVARNNTDK PVRIDESRCG GRWVIGVAAW
PHAWLQPGEE SEVYIAVRQP QISKMAKESR PSLLRGAKP
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