Gene PSPTO_1288 details

Gene Information

• Locus tag: PSPTO_1288
• Symbol: edd
• ID: 1182924
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 1416479
• End bp: 1418305
• Gene Length: 1827 bp
• Protein Length: 608 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 637392662
• Product: 6-phosphogluconate dehydratase
• Protein accession: NP_791117
• Protein GI: 28868498
• COG category: [E] Amino acid transport and metabolism; [G] Carbohydrate transport and metabolism
• COG ID: [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase
• TIGRFAM ID: [TIGR01196] 6-phosphogluconate dehydratase

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCATCCCC GCGTCCTTGA AGTAACCGAG CGGCTCATTG CTCGCAGTCG CGATACCCGT 
CAGCGCTACC TTCAATTGAT TCGAGGCGCA GCGAGCGATG GCCCGATGCG CGGCAAGCTT 
CAATGTGCCA ACTTTGCTCA CGGCGTCGCC GCCTGCGGAC CGGAGGACAA GCAAAGCCTG 
CGTTTGATGA ACGCCGCCAA CGTGGCAATC GTCTCTTCCT ACAATGAAAT GCTCTCGGCG 
CATCAGCCCT ACGAGCACTT TCCTGCACAG ATCAAACAGG CGTTACGTGA CATTGGTTCG 
GTCGGTCAGT TTGCCGGCGG CGTGCCTGCC ATGTGCGATG GCGTGACTCA GGGTGAGCCG 
GGCATGGAAC TGGCCATTGC CAGCCGCGAA GTGATTGCCA TGTCCACGGC AATTGCCTTG 
TCACACAATA TGTTCGACGC CGCCATGATG CTGGGTATCT GCGACAAGAT CGTCCCCGGC 
CTGATGATGG GGGCGTTGCG TTTCGGTCAT CTGCCGACCA TCTTCGTGCC GGGCGGGCCG 
ATGGTGTCAG GTATCTCCAA CAAGGAAAAA GCCGACGTAC GGCAGCGTTA CGCTGAAGGC 
AAGGCCAGCC GTGAAGAGCT GCTGGACTCG GAAATGAAGT CCTATCACGG CCCGGGAACC 
TGCACGTTCT ACGGCACCGC CAACACCAAT CAGTTGGTGA TGGAAGTCAT GGGCATGCAC 
CTTCCCGGTG CCTCGTTCGT CAATCCCTAC ACACCACTGC GTGATGCGCT GACAGCTGAA 
GCGGCTCGTC AGGTCACGCG TCTGACCATG CAAAGCGGCA GTTTCATGCC GATTGGTGAA 
ATCGTCGACG AGCGCTCGCT GGTCAATTCC ATCGTTGCGC TGCACGCCAC CGGCGGCTCG 
ACCAACCACA CGCTGCACAT GCCGGCGATT GCTCAGGCTG CGGGTATTCA GCTGACCTGG 
CAGGACATGG CCGACCTCTC CGAAGTGGTG CCGACCCTCA GTCACGTCTA CCCCAACGGC 
AAGGCCGACA TCAACCATTT CCAGGCCGCA GGCGGCATGT CGTTCCTGAT TCGCGAGCTG 
CTGGCAGCCG GTCTGCTGCA CGAAAACGTT AACACCGTGG CCGGTTATGG CCTGAGCCGC 
TACACCAAAG AGCCATTCCT GGAGGATGGC AAACTGGTCT GGCGTGAAGG CCCGCTGGAC 
AGCCTGGATG AAAACATCCT GCGCCCGGTG GCGCGTCCGT TCTCCCCTGA AGGCGGTTTG 
CGGGTCATGG AAGGCAACCT GGGTCGCGGT GTCATGAAAG TATCGGCCGT TGCGCTGGAG 
CATCAGATTG TCGAAGCGCC AGCCCGAGTG TTTCAGGATC AGAAGGAGCT GGCCGATGCG 
TTCAAGGCCG GCGAGCTGGA ATGTGATTTC GTCGCCGTCA TGCGTTTTCA GGGCCCGCGC 
TGCAACGGCA TGCCCGAACT GCACAAGATG ACCCCGTTTC TGGGCGTGCT GCAGGATCGT 
GGTTTCAAAG TGGCGCTGGT CACCGATGGA CGGATGTCGG GCGCCTCAGG CAAGATTCCG 
GCGGCGATTC ACGTCTGCCC GGAAGCGTTC GATGGTGGCC CGTTGGCACT GGTACGCGAC 
GGCGATGTGA TCCGCGTGGA TGGCGTAAAA GGCACGTTAC AAGTGCTGGT CGAAGCGTCA 
GAATTGGCCG CCCGAGAACC GGCCATCAAC CAGATCGACA ACAGTGTCGG CTGCGGTCGC 
GAGCTTTTTG GATTCATGCG CATGGCCTTC AGCTCCGCAG AGCAAGGCGC CAGCGCCTTT 
ACCTCTAGTC TGGAGACGCT CAAGTGA 

 

Protein sequence

MHPRVLEVTE RLIARSRDTR QRYLQLIRGA ASDGPMRGKL QCANFAHGVA ACGPEDKQSL 
RLMNAANVAI VSSYNEMLSA HQPYEHFPAQ IKQALRDIGS VGQFAGGVPA MCDGVTQGEP 
GMELAIASRE VIAMSTAIAL SHNMFDAAMM LGICDKIVPG LMMGALRFGH LPTIFVPGGP 
MVSGISNKEK ADVRQRYAEG KASREELLDS EMKSYHGPGT CTFYGTANTN QLVMEVMGMH 
LPGASFVNPY TPLRDALTAE AARQVTRLTM QSGSFMPIGE IVDERSLVNS IVALHATGGS 
TNHTLHMPAI AQAAGIQLTW QDMADLSEVV PTLSHVYPNG KADINHFQAA GGMSFLIREL 
LAAGLLHENV NTVAGYGLSR YTKEPFLEDG KLVWREGPLD SLDENILRPV ARPFSPEGGL 
RVMEGNLGRG VMKVSAVALE HQIVEAPARV FQDQKELADA FKAGELECDF VAVMRFQGPR 
CNGMPELHKM TPFLGVLQDR GFKVALVTDG RMSGASGKIP AAIHVCPEAF DGGPLALVRD 
GDVIRVDGVK GTLQVLVEAS ELAAREPAIN QIDNSVGCGR ELFGFMRMAF SSAEQGASAF 
TSSLETLK