| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1237 |
|---|
| Symbol | algX |
|---|
| ID | 1182873 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 1357425 |
|---|
| End bp | 1358864 |
|---|
| Gene Length | 1440 bp |
|---|
| Protein Length | 479 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637392612 |
|---|
| Product | alginate biosynthesis protein AlgX |
|---|
| Protein accession | NP_791067 |
|---|
| Protein GI | 28868448 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.607162 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACGCAC ATCTGATCAA GCTGTTGAGC CTGTCCAGCC TCACCGCCGC CTTGATGGCC
GCCGCCGGTG TCGCTAGGGC AGACGACGCA CAAGCGCCGA CGTTCAAGGC CGAGCCTTGC
TGCAGCCTGT GCCCGGCCGC ACACGACGCA AAAAACTACA CCACCCGCTA CCAGCAGAAC
TTCACCACGC TGGTACAGGC TCAGGGCGAC TGGCTGTTCC GGACGCAGGA AGACCTGCGC
ACCGAGTTCG ACACCACGCC GGGCGGCTAC CGCCGCATGA AAGAACTGCA CGATGCGTTC
AAGAGCAAGG GCGTCGAGCT GGTCGTGGTT TATCAGCCGA CCCGTGGCCT GGTTGATCGT
AACAAGCTGT TCCCGGCCGA ACGCGACAAG TTCGACTACG ACAAGGCGCT GAAAAACTAT
CAGGCCATGC TCGGTCGCTT CAGCAAGATG GGTTACTGGG TGCCGGACCT GTCGCCGTTG
ACCAACGAAC AGCAGGCACA CGACTTCTAC TTCCGCGGCG ACCAGCACTG GACGCCATAC
GGCGCACAAC GCACCGCGAA AATCGTTGCC GAGACCGTTA AAAAAGTACC GGGCTACAGC
AGCATTCCGA AACGTGAATT TGAAAGCCAT ATTTCAGGAC GCATGGGCAA GACAGGCACT
TTGCACAATA TGGCCGGGCA GTTGTGCGGC ACCAGCTACG CGGTGCAGTA CATGGACCAG
TTCACTACCG AGCCCAAGGG CGAGGCTGGC GACGGCGACC TGTTCGGTGA CGCCGGCAAC
CCGGAAATCA CCCTGGTCGG CACCAGCCAC AGCGGCAAGA ACTACAACTT TGCGGGCTTT
TTGCAGGAAT ACATGGGCGC CGACGTGTTG AACGTGGCGT TCCCGGGTGG TGGTCTGGAA
GGTTCGATGC TGCAGTACCT GGGCAGCGAA GACTTCCAGA AACGTCCGCC GAAGATTCTC
ATCTGGGAAT TCTCGCCGCT GTATCGCCTG GACCAGGAGA CCATCTATCG CCAGATGATG
GCGCTGCTCG ACAACGGCTG CGAAGGCAAG CCTGCGGTCA TGAGCGCCAG CACTACCTTG
AAGCCGGGCA ACAACGAAGT GCTGGTCAAC GGCAAGAACG GCATCAAGGA TATTCGCAAT
GGCAGCAACC AGATCGATAT CCGCTTTGAC GACACGTCGG TGAAAACCCT CCAGGCCAGA
CTCTGGTACA TGAACGGTCG CCACGAGGAC CTGAAAATCG AGAAGCCGGA AACTTCCGAT
ACCGACGGAC GCTTCGCCTT TGAATTGCGC GAAGACGAGG ATTGGGCCGA CCAGCAACTG
CTGGCACTCG AAATCCAGGG ACCGGAAGCA GGCACGGCAC CGCAGAAAGT GGCTGCCAAA
GTATGCAAAC GCAACGTGTT CCCGAGCGCT GCGAAACACA CCGCTCAAGC TGGACTATGA
|
|---|
| Protein sequence | MHAHLIKLLS LSSLTAALMA AAGVARADDA QAPTFKAEPC CSLCPAAHDA KNYTTRYQQN
FTTLVQAQGD WLFRTQEDLR TEFDTTPGGY RRMKELHDAF KSKGVELVVV YQPTRGLVDR
NKLFPAERDK FDYDKALKNY QAMLGRFSKM GYWVPDLSPL TNEQQAHDFY FRGDQHWTPY
GAQRTAKIVA ETVKKVPGYS SIPKREFESH ISGRMGKTGT LHNMAGQLCG TSYAVQYMDQ
FTTEPKGEAG DGDLFGDAGN PEITLVGTSH SGKNYNFAGF LQEYMGADVL NVAFPGGGLE
GSMLQYLGSE DFQKRPPKIL IWEFSPLYRL DQETIYRQMM ALLDNGCEGK PAVMSASTTL
KPGNNEVLVN GKNGIKDIRN GSNQIDIRFD DTSVKTLQAR LWYMNGRHED LKIEKPETSD
TDGRFAFELR EDEDWADQQL LALEIQGPEA GTAPQKVAAK VCKRNVFPSA AKHTAQAGL
|
|---|
| |