Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1221 |
Symbol | |
ID | 1182857 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 1338122 |
End bp | 1338751 |
Gene Length | 630 bp |
Protein Length | 209 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637392598 |
Product | transporter, LysE family |
Protein accession | NP_791053 |
Protein GI | 28868434 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1280] Putative threonine efflux protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.360927 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATTTGT CGACACTTAT ATTCTTCTTG CCTGCGTGCT TTGCTTTGAA TCTAGCTCCG GGTCCAAACA ATCTCCTCTC AATAAATAAT GCAGCGCATC ATGGTTTCGC GGCTTCTTGC TTTGCGGGGC TTGGGAGGCT TGTCGCATTC GCCATAATGA TAGCTCTAGC TTCCGCCGGG CTAGCGGCCG TGATCTTTGC ATCCAAAACG ATTTTTATTA CCGTAAAATT GCTAGGTGCT GCCTACCTTA TCTACTTGGC GTACAAGTTA TGGGTCAGCG ATGGGAGTGC GATGGATCAA AAGGGTGGTG AGTTAGAAGG GAAAATATCA ACGCTAATGC GTCGAGAATT TCTTGTGGCA ATTGGAAACC CTAAAGCGAT ATTGATATTT ACTGCGTTCC TGCCTCAATT TGTCGTACCT GACGAGGATG TATTCACGCA ATTTATTACT CTTGGAGCTA CATTCTTAGC TCTCGAATGG ATCGCTATTG CAATTTATGC ATATTTGGGG CTGCATCTTC AGCGGTGGCT TGCGGGAGTT AAGGCAAAAA AAATATTTAA TCGAGTTTGC GGTTCGCTTC TTGGTGGGGC CGGTTTATCT TTGCTCGTTG CTAGGCATGC GGGGTTGTAA
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Protein sequence | MDLSTLIFFL PACFALNLAP GPNNLLSINN AAHHGFAASC FAGLGRLVAF AIMIALASAG LAAVIFASKT IFITVKLLGA AYLIYLAYKL WVSDGSAMDQ KGGELEGKIS TLMRREFLVA IGNPKAILIF TAFLPQFVVP DEDVFTQFIT LGATFLALEW IAIAIYAYLG LHLQRWLAGV KAKKIFNRVC GSLLGGAGLS LLVARHAGL
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