| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1217 |
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| Symbol | |
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| ID | 1182853 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 1332394 |
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| End bp | 1333890 |
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| Gene Length | 1497 bp |
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| Protein Length | 498 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637392594 |
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| Product | outer membrane efflux protein |
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| Protein accession | NP_791049 |
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| Protein GI | 28868430 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.538027 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCCGCGTC GCATTATCAG AGGGCTCTGG CCCGTAGGTC TTCTGGCTTT TACGCTGGTC
CTCAGCGGCT GTATCGGAAC ACATGGAATC ACACCGCAGG GCATTGTTCT GCACGCTGAC
AGCTTGGCCA CCGATCAGGC GATTCAGAGC GCTTCCCTCG ACGCCCATTG GCCCGCAGCG
CAATGGTGGC GTGCCTACGG CGACGCGCAA CTGGATCGAT GGGTCGACAT GGCGACGCTG
GGCAGCCCGA GTCTGGCACT TGCCGCTGCT CGTGTGCGCC AGGCAAAGGC GATGGCGCAG
GTGGCCGAGT CCGCCGAGTC TGTGCAAGTG CAAGGCAACG CCAGCCTGAT GCGTCACGAC
TGGCCCGAGG ATCAGTTTTA TGGCCCCGGC GCGCTGGCCG ATACTCACAC CTGGGACAAC
AATGCGTCGC TGGGCTTGAG CTACGCACTG GACCTGTGGG GACGTGAACG CAACGCCAGC
GAGCAGGCCG TTGATCTGGC GCACATGAGT GCTGCCGAGC AGCGTCAGGC GCAGCTCGAA
TTGCAGGAAA ACGTGGTCCG CGCCTACATC CGGCTGTCCC TCGACTACGC CCGACTGGAT
ATCGCCGAGG CGGCACTGGC CCAGCAGCAA CAGATACTCG ACCTGGCGCT GCGTCGCCTC
AAGGGCGGGA TCGGTACGCA CTTCGACGTC AGTCAGGCCG AAACCCCGCT GCCTGAGGCA
CATCGGCAGA TCAACGCGCT GCAAGAGGCC ATCGCGTTGA GTCGCAACCA ACTGGCCGCG
CTGGCAGGCA AGGGACCGGG GCAGGGCGCA GCGTTGCAGC GGCCTGCGCT GTCGTTGCAC
ACCGCGCTGA CATTGCCCTC GGCATTGCCC GCCGAACTGC TTGGTCAGCG ACCTGACGTG
GTGGCTGCGC GCTGGCAGGT GGCGGCGCAG GCACGCGGTA TCGACGTTGC GCATGCGGAC
TTTTATCCCA ACGTCAATCT GGTCGGCAGC CTGAGCTACA TGGCCACGGG CGGTGGCTTA
CTCGAGTTTC TGAACGGCAG CAAGCTGGGT TACAAGGTCG GGCCGGCCAT CAGCCTGCCG
ATTTTCGACG CTGGACGCTT GCGGGCGGAG CTGGGGCGGG TGTCCGCTGC TTATGATCAG
GCCGTGGCGC ATTACAACCA GACGCTGGTG ATGGCGCTGA AAAGTGTTTC CGACCAGTTG
ATTCGGCGCA CCTCTATGGA CAAGCAGCAG GCACTCGCCG CCGAGTCGGT GGCGTCGGCG
CAAAAGACCT ACGACATTGC TTTGATCGCC TGGCAGCGCG GCCTGACCGA TTACCTGAAC
GTGCTCAATG CGCGCACGCA GTTGTTTCGC CAGCAGCAGG TTCAGCAACA GGTCGAGGCC
GCGCGACTGG AAGCCTACGC CGGGCTGATG GTGGCGCTGG GCGGTTACGC TGACGGGAAT
CGCAAAGGCA ATGGTCATTG CGCACACACC GTCGCCGAGT CTGAGGGCGG GCAATGA
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| Protein sequence | MPRRIIRGLW PVGLLAFTLV LSGCIGTHGI TPQGIVLHAD SLATDQAIQS ASLDAHWPAA
QWWRAYGDAQ LDRWVDMATL GSPSLALAAA RVRQAKAMAQ VAESAESVQV QGNASLMRHD
WPEDQFYGPG ALADTHTWDN NASLGLSYAL DLWGRERNAS EQAVDLAHMS AAEQRQAQLE
LQENVVRAYI RLSLDYARLD IAEAALAQQQ QILDLALRRL KGGIGTHFDV SQAETPLPEA
HRQINALQEA IALSRNQLAA LAGKGPGQGA ALQRPALSLH TALTLPSALP AELLGQRPDV
VAARWQVAAQ ARGIDVAHAD FYPNVNLVGS LSYMATGGGL LEFLNGSKLG YKVGPAISLP
IFDAGRLRAE LGRVSAAYDQ AVAHYNQTLV MALKSVSDQL IRRTSMDKQQ ALAAESVASA
QKTYDIALIA WQRGLTDYLN VLNARTQLFR QQQVQQQVEA ARLEAYAGLM VALGGYADGN
RKGNGHCAHT VAESEGGQ
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