| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1214 |
|---|
| Symbol | |
|---|
| ID | 1182850 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 1329246 |
|---|
| End bp | 1330148 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637392591 |
|---|
| Product | membrane protein |
|---|
| Protein accession | NP_791046 |
|---|
| Protein GI | 28868427 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.201736 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACATTT CGCTTTATCT GCTGACTGTG CTGATCTGGG GCACGACCTG GATCGCCCTG
AAACTTCAAC TCGGCGATGT CGCTATTCCA GTCTCCATCG TGTATCGCTT CGCATTGGCG
GCCCTGGTGC TGTTCGGTTT TTTGTTGCTG AGCAAACGCC TGCAACCGGT CAATCGTCGC
GGCCAGTTGA TCTGTCTGGC GCAGGGCGTG TGCCTGTTCT GCGTCAACTT CATGTGTTTC
TACACCGCCA GCCAATGGAT ACCAAGCGGC CTGATCGCCG TGGTGTTCTC GACCTCGACG
TTATGGAATG CGCTGAATGC GCGGGTGTTC TTTCGCCAGA AAATCGCCGG CAACGTCATG
GCCGGTGGCG CGATGGGCTT GCTGGGGCTG GCGTGTCTGT TCTGGCCCGA GCTGTCCGGG
CACAGCGCCA GCCGCGAGAC CCTGATCGGC CTGGGCCTGG CCCTGCTCGG CACACTGTGC
TTCTCGGCGG GCAACATGCT GTCGAGCCTG CAACAAAAAG CCGGCCTGCG CCCGCTGACC
ACCAATGCCT GGGGGATGTT CTACGGCGCA AGCATTCTTG GCATTTACTG CCTGCTCAGC
GGCACACCGT TCACGTTTGA GTGGAACACG CGCTACGTCG GTTCGCTGTT TTACCTGGTG
ATACCCGGCT CGGTGATCGC CTTTACCGCC TACCTGACCC TGGTCGGGCG CATGGGCCCG
GAGCGCGCGG CTTACTGCAC CGTGCTGTTC CCGATTGTGG CGCTGAACAT CTCGACATGG
GTTGAGGGCT ACCAGTGGAC CTTTGCCGCC TTGCTTGGGC TGGTGCTGGT GATGGCGGGG
AATGTGCTGG TGTTCAGAAA AGCCAGGCCG GTTGCCGTTG TGGTGAACGG CAAGCTGGCT
TGA
|
|---|
| Protein sequence | MNISLYLLTV LIWGTTWIAL KLQLGDVAIP VSIVYRFALA ALVLFGFLLL SKRLQPVNRR
GQLICLAQGV CLFCVNFMCF YTASQWIPSG LIAVVFSTST LWNALNARVF FRQKIAGNVM
AGGAMGLLGL ACLFWPELSG HSASRETLIG LGLALLGTLC FSAGNMLSSL QQKAGLRPLT
TNAWGMFYGA SILGIYCLLS GTPFTFEWNT RYVGSLFYLV IPGSVIAFTA YLTLVGRMGP
ERAAYCTVLF PIVALNISTW VEGYQWTFAA LLGLVLVMAG NVLVFRKARP VAVVVNGKLA
|
|---|
| |