Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1156 |
Symbol | |
ID | 1182792 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 1269514 |
End bp | 1270254 |
Gene Length | 741 bp |
Protein Length | 246 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637392535 |
Product | isochorismatase family protein |
Protein accession | NP_790990 |
Protein GI | 28868371 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1335] Amidases related to nicotinamidase |
TIGRFAM ID | [TIGR03614] pyrimidine utilization protein B |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGCTC CGCTAAGCGT CGCAGGCGTC GACCTGCCGC AGGATGATCA GCCTGCCCGT GTGCTGCCGG CCCGGCCCGA AGCGCTGCGT ATGAAGCTCG GCGAAACGGC GCTGGTGGTG GTTGACATGC AGAATGCCTA CGCATCGCTC GGCGGTTATC TGGACCTGGC CGGGTTCGAT GTCAGCAGCA CCGGGCCGGT CATCGCCAAC ATCAAGCGGG CCTGCGCAGC TGCACGAGCC GCTGGCATGC CGGTGATCTT TTTTCAGAAC GGCTGGGACC CGGCCTACGT CGAGGCCGGT GGCCCCGGTT CGCCGAACTG GCACAAGTCC AACGCCTTGA AAACCATGCG CAAACGCCCG GAACTCGAAG GGCAATTGCT GGCCAAGGGC GGCTGGGACT ATCAACTGGT CGACGAGCTG AAGCCCGAGC CAGGCGACAT CGTGGTACCG AAAATCCGTT ACAGCGGCTT TTTCAATTCC AGTTTCGACA GCATGTTGCG CAGTCGCGGT ATTCGCAACC TGGTGTTCAC CGGCATCGCG ACCAATGTCT GCGTCGAATC GACCCTGCGT GACGGCTTCC ACCTGGAGTA TTTCGGTGTG GTGCTGGCAG ATGCCACCCA TCAGGCAGGT CCGGAATTCG CCCAGCAGGC CGCCCTGTTC AACATCGAAA CGTTCTTCGG CTGGGTATCC AGCGTCGATG ACTTCTGCAC CACTTTCAGC CCTTTCGGGC AACCTTTGTG A
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Protein sequence | MTAPLSVAGV DLPQDDQPAR VLPARPEALR MKLGETALVV VDMQNAYASL GGYLDLAGFD VSSTGPVIAN IKRACAAARA AGMPVIFFQN GWDPAYVEAG GPGSPNWHKS NALKTMRKRP ELEGQLLAKG GWDYQLVDEL KPEPGDIVVP KIRYSGFFNS SFDSMLRSRG IRNLVFTGIA TNVCVESTLR DGFHLEYFGV VLADATHQAG PEFAQQAALF NIETFFGWVS SVDDFCTTFS PFGQPL
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