Gene PSPTO_1042 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_1042 
Symbol 
ID1182676 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand- 
Start bp1141370 
End bp1142032 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content61% 
IMG OID637392421 
Producttranscriptional activator ChrR 
Protein accessionNP_790878 
Protein GI28868259 
COG category[T] Signal transduction mechanisms 
COG ID[COG3806] Anti-sigma factor 
TIGRFAM ID[TIGR02451] anti-sigma factor, putative, ChrR family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.998121 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGCCCAC TACATCATCC GGATGACGCA ACCCTGATCA GCTACGCCGC AGGGGCGTTG 
TCGCAGGTCA TCGCGGTAGT CACCGCTGCT CACCTGGAGC GCTGCGCCGA ATGCCGGGCA 
CGGCTGCGGC AGGCCGAACA GATCGGCGGC GTTTTGATGC AGCAGTCCAT CAGCCGTGTG 
GTGCCGCTCA AAAGCCGGAT GGCCATGCTG GCGCGCCTGG ACGAGCAGGA AACCAGCGTC 
GATTCGGTCA TGCACGCCAT GCCAGCGGCC AATCATGACC CTGACTTGCT TCCCCACTGC 
ATGCACGCGC ATTTCGGCCG GCACCTGAGC ACATTGAAGT GGAAAACCCT GATCCCCGGT 
GTTCAGCGCG TCAGCGCTCA GGGGATCGAA CAGGGCAACC TCATGCTGCT GAAAATCGCA 
CCCGGCGTCA GCATGCCGGT CCACAGCCAT GAAAGCGGCG AAATGACCAT GGTGCTCAAG 
GGCGCTTATC ACGACGTGCA GGGTGAATTC GGACTCAACG ATGTGGCCGA TCTGGACAGC 
CACATCCAGC ACCAGCCCAT CGCCTACCCT GATCGGGAAT GCATCTGTGT ATTGGCGGCA 
GAGTCAAAGC TGCGCTTCCA CGGCTGGATG GCGCGGATGA TGCAGCCGTT TTTCGGGATT 
TGA
 
Protein sequence
MGPLHHPDDA TLISYAAGAL SQVIAVVTAA HLERCAECRA RLRQAEQIGG VLMQQSISRV 
VPLKSRMAML ARLDEQETSV DSVMHAMPAA NHDPDLLPHC MHAHFGRHLS TLKWKTLIPG 
VQRVSAQGIE QGNLMLLKIA PGVSMPVHSH ESGEMTMVLK GAYHDVQGEF GLNDVADLDS 
HIQHQPIAYP DRECICVLAA ESKLRFHGWM ARMMQPFFGI